| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2688 |
|---|
| Symbol | |
|---|
| ID | 7972287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2830925 |
|---|
| End bp | 2831392 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644793276 |
|---|
| Product | rRNA large subunit methyltransferase |
|---|
| Protein accession | YP_002944579 |
|---|
| Protein GI | 239815669 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1576] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.169878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGC TGGTGGTCGC CGTCGGGCAG CGCATGCCCG ACTGGGCGCA GACTGCCTGG
GACGACTACG CCAAGCGCTT CCCGCCCGAG CTCAAGCTCG AACTGCGCGC CGTCAAGACC
GAACCCCGCG GCTCCAAGTC GCTCGAGACG CTCTATGCGG CCGAGCGCGA ACGCATCGAG
GGTGCCATTG CCAAGGGCAT GCGCATCGTC GTGCTCGACG AGCGCGGCAC CGCACTCACC
ACCAAGGCGC TGGCCGCGCG CCTGCAGGCC TGGCAAGGCG AGGGCGACGA CGTGGCCCTG
GTGATCGGCG GCCCCGACGG GCTCGACCCC GCCTTCAAGG CCGCAGCCCA CGAACGCATC
CGCCTGTCCG ACCTGACCCT GCCGCATGCG ATGGCGCGCG TGCTGCTCGT GGAGCAGCTG
TACCGGGCCT GGTCGGTCAA CGCGGGCCAT CCGTACCACC GGGAATGA
|
|---|
| Protein sequence | MKLLVVAVGQ RMPDWAQTAW DDYAKRFPPE LKLELRAVKT EPRGSKSLET LYAAERERIE
GAIAKGMRIV VLDERGTALT TKALAARLQA WQGEGDDVAL VIGGPDGLDP AFKAAAHERI
RLSDLTLPHA MARVLLVEQL YRAWSVNAGH PYHRE
|
|---|
| |