Gene Vapar_2687 details

Gene Information

• Locus tag: Vapar_2687
• ID: 7972286
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2830263
• End bp: 2830928
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644793275
• Product: iojap-like protein
• Protein accession: YP_002944578
• Protein GI: 239815668
• COG category: [S] Function unknown
• COG ID: [COG0799] Uncharacterized homolog of plant Iojap protein
• TIGRFAM ID: [TIGR00090] iojap-like ribosome-associated protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0645219
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCACTG AAGCCGCCGC CAAGAAAGAC ACCCAGAAAC TCCAGCGAGC CATCATCGAT 
GGTCTCGAAG ACGTCAAGGC GCAGGACATC CAGGTTTTCG ACACCGAGCA TCTCTCGCCG 
CTGTTCGAGC GCGTGATCGT GGCTTCGGGC ACCTCCAACC GGCAGACCAA GGCGCTGGCC 
GCCAGCGTGC GCGATGCCGT GCGCGAAGCC GGCTTCGGCA AGCCGCGCAT CGAGGGCGAG 
GACAACGGCG AGTGGATCAT CGTGGACTGC GGCGCCGCCG TCGCGCACAT CATGCAGCCG 
GCCATCCGCC AGTACTACCA CCTCGAGGAG ATCTGGGGCG ACAAGCCGGT GCGCGCCAAG 
CTCGGCGGCA CCAAGCCGGC CCTTGCCACC GCCTCCAAGG TGATCGAGGA GAAGAAGCCG 
GTCGCGGCCA AGATGCCCAA CCTGCGCCGC GCGAGCGCGG CCAAGACCGC CATCCGCGCG 
GCCGAGCAGG AAGCCAAGGC CGAGAAGGCC GGCCGAAGCC CGGCAAAGAA GACTGCCGCC 
AAGAAGGCGC CCGCGCGGAA GACCACCACG GCGCGCGTGC CGGTCAAGGT GGTCGGCAAG 
CCCGCCGCCA AGAAGCCAGC CGCAAAGAAG GCGCCTGCCA AGAAGGCGCC TGCCCGCCGC 
GCATGA 

 

Protein sequence

MTTEAAAKKD TQKLQRAIID GLEDVKAQDI QVFDTEHLSP LFERVIVASG TSNRQTKALA 
ASVRDAVREA GFGKPRIEGE DNGEWIIVDC GAAVAHIMQP AIRQYYHLEE IWGDKPVRAK 
LGGTKPALAT ASKVIEEKKP VAAKMPNLRR ASAAKTAIRA AEQEAKAEKA GRSPAKKTAA 
KKAPARKTTT ARVPVKVVGK PAAKKPAAKK APAKKAPARR A