Gene Vapar_2671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2671 
Symbol 
ID7972819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2814157 
End bp2815866 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content73% 
IMG OID644793259 
ProductBeta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 
Protein accessionYP_002944562 
Protein GI239815652 
COG category[I] Lipid transport and metabolism 
COG ID[COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.669798 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGCCG ATACCCGCCT GCTGCCGCTG ATCGCCAACC GGGACCTCGA TGCACCGCTG 
GCCTGGCGCG CCGGCGTGCC GGTGAGCACG CGCCAGTTCC TGGCCGACGT GGCCCGCTTC
GCGCCGCTGC TGCCGGCCGA GGGCCGGGCC GTCAATCTCT GTGTCGACCG CTATGCGTTT
GCGGTCGGCC TGGCCGCTGC GCTGGTGCGC GGCCATGCGA GCCTGCTGCC GCCCGACGCG
CGGCCCGACA CGCTCGCGCG CCTGCTCGAA TCCGGCGGCT CGAATCTTTT CGCGCTGACC
GATGACGCCG CGCTCGCCAC GCCCGGCATG CCGCGCCTGC TGGTCGAATA CCGCGGCGGC
TCCGAAGGCG ATGCGGGCCT CGAGCTTCCG GCCATCGACG GCGCCATGCA CGCGGTGAGC
CTGCTGACCT CCGGCTCCAC CGGTGCGCCG CAGCCGCATG CCAAGCGCTG GGACACGCTG
GTCGGCGACG TCGCGGTGGC GGTGGAGCGG CTCTCCAGCC TGCTCGGTCT GCCATCGCTC
GCCGGCCTGA CGCTGGTGGC GACCGTGCCC GTGCAGCACA GCTACGGGCT GGAATCATCG
GCGCTGCTGG CCATGCTCGG CGGCGCCGCG TTCGACAGCG GACGGCCGTT CTTTCCAGCC
GACGTGGCCA AGACGCTGGC TTCGGTGCCA CGCCCCCGCG CACTGGTCAC CACGCCTTTC
CACCTGAAGA CGCTGCTGCT CTCGGGCATC GAGCTGCCGC CGGTCGACCT GGTGCTTTCC
GCCACCGCGC CGCTCTCGCC GCAGCTCGCG GCCCAGGCCG AGCAGGCGCT CGGCGGCGTG
CTGATCGAGA TCTACGGCAG CACCGAGTCC GGCCAGGTCG CCACCCGCCG CACCACGCAG
AGCGAAGTCT GGGAGACCTT CGGAGATATC CGCGTGCACG CCCAGCCAGG GGAGGGCGAC
GGGGCCGAGC GCTTCATCTT CAGCGGCGAC TTCCTGCCCG AGCCCACGCC CATGGCCGAC
GTGCTCGAAC TGCTCGACGC ACGGCGCTTC CGGCTGCTGG GCCGCGCCAA CGACCTGATC
CATGTCGCGG GCCGGCGCAG CTCGCTCGCG CACTTGAACT ACCACCTCAA CAGCATCGCG
GGCGTCGAGG ACGGCGCGTT CTGGCTGCCC GACGAAGTGG CCGACGGCGT GGTGCGTCCG
GTGGCCTTCG TGGTCGCGCC CACGCTCTCG GCCGGCCAGA TCATTGCCGC GCTGCGCCAG
CGGCTGGAGC CGGTGTTCGT GCCGCGCCGC GTGGTGCAGG TGAAGGCCTT TCCGCGCGAA
GGCACCGGCA AGCTCACGGC GCGCGCGCTG CGCGAATTCG CGCTCGCGCA GCTGGCAGAA
GACGACACAC CGGTGCAGCT GGCCCATGCG GTGCCGGTCG ACCATCCGGC ATTCGCGGGC
CACTTCCCCG GCCAGCCGCT GCTGCCGGGA GCGCTGATAC TGGCCGAGGT CATGGAAGCC
GTGCAGCGCG TGCCCGCGCT GGCCGCCCGG CTGGGTGCCC ATCCCACGCT CGCGGCCGCC
AAGTTCCTGG CACCCGTGCG GCCGGGCAGC ATGCTCTCCA TCGAGCTGCA GCCCGAGTCC
GGCGCCGCGC GCGGCGTGCG CTTCGACGTG CGCTGCGACG GCGTGCTGGC TGTCACCGGC
CGCTGGGCCG CCGTGCCAGA GTCTGCGTGA
 
Protein sequence
MSADTRLLPL IANRDLDAPL AWRAGVPVST RQFLADVARF APLLPAEGRA VNLCVDRYAF 
AVGLAAALVR GHASLLPPDA RPDTLARLLE SGGSNLFALT DDAALATPGM PRLLVEYRGG
SEGDAGLELP AIDGAMHAVS LLTSGSTGAP QPHAKRWDTL VGDVAVAVER LSSLLGLPSL
AGLTLVATVP VQHSYGLESS ALLAMLGGAA FDSGRPFFPA DVAKTLASVP RPRALVTTPF
HLKTLLLSGI ELPPVDLVLS ATAPLSPQLA AQAEQALGGV LIEIYGSTES GQVATRRTTQ
SEVWETFGDI RVHAQPGEGD GAERFIFSGD FLPEPTPMAD VLELLDARRF RLLGRANDLI
HVAGRRSSLA HLNYHLNSIA GVEDGAFWLP DEVADGVVRP VAFVVAPTLS AGQIIAALRQ
RLEPVFVPRR VVQVKAFPRE GTGKLTARAL REFALAQLAE DDTPVQLAHA VPVDHPAFAG
HFPGQPLLPG ALILAEVMEA VQRVPALAAR LGAHPTLAAA KFLAPVRPGS MLSIELQPES
GAARGVRFDV RCDGVLAVTG RWAAVPESA