| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2666 |
|---|
| Symbol | |
|---|
| ID | 7972428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2810336 |
|---|
| End bp | 2810902 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644793254 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_002944557 |
|---|
| Protein GI | 239815647 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.782226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCA GTTCGCGAAC AAGCGACGCC GAAGCCGCGC TGCGCAGCCT GTTCCTGCGC
GGCCTGGACG GCGACGCGGC CGCCTATCGC GAATTTCTGC AAAAACTCAG CGCGCATCTG
CGCGCCTTTC TGGGCAAGCG CCTGTTCGGC TGGCCCGATG AAGTGGAAGA CCTTGTCCAG
GAATGCCTGC TCGCCATGCA CAACCAGCGC CACACCTACC AGAGCGACCA GCCGCTGACG
GCCTGGGTGC ATGCGATTGC GCGCTACAAG ATGATCGACC TGCTGCGCGC CAAGTCGGCG
CGCGAAGCAC TGCATGACCC GCTGGACGAC GACCTGGCGG TGTTCGCCGA ATCGGCCATC
GAGGCCAGCG ATGCCCGGCG CGACCTGGGC GGCCTGCTGC AGACCCTGCC GGACCGCCAG
CGCCTGCCGA TCGTGCACGT GAAGCTCGAA GGCCTCTCGG TGGCCGAGAC GGCAAGCCTC
ACCGGCATGT CCGAATCGGC CGTGAAGGTG GGCATCCACC GCGGACTCAA GGCGCTTGCC
GCCAGGCTCA GGAGCCGTGC GCCATGA
|
|---|
| Protein sequence | MDSSSRTSDA EAALRSLFLR GLDGDAAAYR EFLQKLSAHL RAFLGKRLFG WPDEVEDLVQ
ECLLAMHNQR HTYQSDQPLT AWVHAIARYK MIDLLRAKSA REALHDPLDD DLAVFAESAI
EASDARRDLG GLLQTLPDRQ RLPIVHVKLE GLSVAETASL TGMSESAVKV GIHRGLKALA
ARLRSRAP
|
|---|
| |