| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2663 |
|---|
| Symbol | |
|---|
| ID | 7972425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2807772 |
|---|
| End bp | 2809124 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644793251 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002944554 |
|---|
| Protein GI | 239815644 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0807] GTP cyclohydrolase II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.56864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCAG ATAGCACAGC GACCCCTTCC GAAATTCCCG AGATTTCCGC GATCCCCGCC
GTCCCTGCGA CTTCAGCGAT CTCCGTCTCG CCCCTTCCCC CGCTCCACCC TTCCTCGTCG
ACCGGCCACA TCCGGCTGAC CTCCCATGCC GGCGGCTTCG GCGCATTGCC CATCCGCTGG
GGCGCGGCCA CCGCCGCCGA GCGCGGACCC GTGGTCGGCA CCACCACGAA GCGGGCGCAC
CGCAACGTCA TCGGCACGCA CAGCGGCTCC TACAGCGTCT ATCGCGCATT GGCCGTGGCG
GCCGGCGCGC TCAAGCGCGA GCACAAGGCC GACCTGACCA ACACCGCGCC CACCGACGTG
ATCGGCCCGT ACCCGCAGTG GAGCGAGCCC GGACGCATCG TCTCGCTCGA CCCCTGGGGC
GCGCTGGTGG CCGATGTGTT CTCCACGGAA CTGGCCGCGG GCTACGACAT CCGCCCGACC
ATCGCGATCA CCAAGGCCCA CGTGATCCTG CCCGAGGTGA TCGAGGCGCT GCAGAGCGGC
CGCCTCAAGG CCGACGGCCA CTTCCTCACC GCCGGCGGCG CAGCCATGGT GACCAAGGCC
GCCATCGAGC CCGTGTGGTA CCTGCCCGAG GTGGCGCGGC GCTTCGGCTG CTCCGAAACC
GACCTGCGCC GCACGCTGTT CGAGGAAACC GGCGGCATGT ACCCCGAGCT CGTCACGCGC
TCCGACCTCG AGGTGTTCCT GCCACCCATC GGCGGGCAGA CGCTCTACAT CTTCGGCAAC
CCGCGCGACC TCGCCAACCC CGAGGTCGAG CTGACGGCGC GCATCCACGA CGAATGCAAC
GGCTCCGACG TGTTCGGCTC CGACATCTGC ACCTGCCGCC CCTACCTCAC GCACGCCATC
GAGGAATGCA TCCAGGGCGC GCAACGCGGC GGCGTGGGCC TCATCGCCTA CTCGCGCAAG
GAAGGCCGCG CGCTCGGCGA GGTGACCAAG TTCCTGGTCT ACAACGCGCG CAAGCGCCAG
GTCGGCGGCG ACACGGCCGA CCAGTATTTC GCGCGCACCG AATGCGTGGC CGGCGTGCAG
GACATGCGCT TCCAGGAACT GATGCCCGAC GTCTTCCACT GGCTCGGCAT CAAGAAGATC
CATAGGCTCG TGTCGATGAG CAACATGAAG TTCGACGCCA TCACCGGTTC GGGCATCGAG
ATCGGCGAGC GCGTGAACAT TCCGGACGAA CTGATTCCGG CCGACGCCCG CGTCGAGATG
GACGCCAAGA TGGCCGCCGG CTATTTCACG CCCGGCCCGG TGCCGGACGC CGAGGAACTC
AAGAAGGCCA AGGGCCGGGG ATTGAGCGAA TGA
|
|---|
| Protein sequence | MSADSTATPS EIPEISAIPA VPATSAISVS PLPPLHPSSS TGHIRLTSHA GGFGALPIRW
GAATAAERGP VVGTTTKRAH RNVIGTHSGS YSVYRALAVA AGALKREHKA DLTNTAPTDV
IGPYPQWSEP GRIVSLDPWG ALVADVFSTE LAAGYDIRPT IAITKAHVIL PEVIEALQSG
RLKADGHFLT AGGAAMVTKA AIEPVWYLPE VARRFGCSET DLRRTLFEET GGMYPELVTR
SDLEVFLPPI GGQTLYIFGN PRDLANPEVE LTARIHDECN GSDVFGSDIC TCRPYLTHAI
EECIQGAQRG GVGLIAYSRK EGRALGEVTK FLVYNARKRQ VGGDTADQYF ARTECVAGVQ
DMRFQELMPD VFHWLGIKKI HRLVSMSNMK FDAITGSGIE IGERVNIPDE LIPADARVEM
DAKMAAGYFT PGPVPDAEEL KKAKGRGLSE
|
|---|
| |