Gene Vapar_2661 details

Gene Information

• Locus tag: Vapar_2661
• Symbol: upp
• ID: 7972423
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 2805694
• End bp: 2806323
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644793249
• Product: uracil phosphoribosyltransferase
• Protein accession: YP_002944552
• Protein GI: 239815642
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0035] Uracil phosphoribosyltransferase
• TIGRFAM ID: [TIGR01091] uracil phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.121294
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAACG TCCACCTCGT CGACCACCCC CTCGTCCAGC ACAAGCTCAC GCTGATGCGC 
CGCAAGGACG CCTCCACCAA CAGCTTCCGC CGGCTCCTGA ACGAAATCAG CATGCTCATG 
GCCTACGAGG TCACGCGCGA CATGCCGATG CAGGACATCG AGGTCGAGAC CCCGCTCGAA 
ACCATGCAGG CCAAGGTCAT CGACGGCAAG AAGCTGGTGC TGGTGTCGAT CCTGCGCGCG 
GGCACCGGCA TCCTGGACGG CATGCTCACG GTGGTGCCGG GCGCGCGCGT CGGCCACATC 
GGCCTGTACC GCGACCCCAA GACGCTCACG GCCGTCGAGT ACTACTTCAA GATGCCCGGC 
GAGATGGAGA ACCGCGACGT GATCGTGGTC GACCCGATGC TGGCCACCGG CAACTCGGCG 
GTGGCCGCGG TCGAGCGGCT CAAGGAACTC AACCCCAAGT CGATCAAGTT CGTCTGCCTG 
CTCACCTGCC CCGAAGGCCT CGCGACCATG CAGAAGGCCC ACCCCGACGT GCCGGTCTAC 
ACCGCGGCGA TCGACCGGGA GCTCAACAGC CATGGGTACA TCCTGCCGGG CCTCGGCGAC 
GCGGGCGACA GGATTTTCGG CACTAAGTGA 

 

Protein sequence

MSNVHLVDHP LVQHKLTLMR RKDASTNSFR RLLNEISMLM AYEVTRDMPM QDIEVETPLE 
TMQAKVIDGK KLVLVSILRA GTGILDGMLT VVPGARVGHI GLYRDPKTLT AVEYYFKMPG 
EMENRDVIVV DPMLATGNSA VAAVERLKEL NPKSIKFVCL LTCPEGLATM QKAHPDVPVY 
TAAIDRELNS HGYILPGLGD AGDRIFGTK