| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2658 |
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| Symbol | |
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| ID | 7972420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2801924 |
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| End bp | 2803528 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793246 |
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| Product | ABC transporter related |
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| Protein accession | YP_002944549 |
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| Protein GI | 239815639 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00395214 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCA CGACCGTCCT GCGCCTCCAG CGCATCACCA AGCGCTTCGG CACCCTCGTC
GCGAACGACG CCATCTCCCT CGACCTGCAC GCGGGCGAAG TGCTCGCGCT GCTGGGCGAG
AACGGCGCGG GCAAGTCGAC GCTCATGTCC ATCCTGTTCG GCCACTACGT CGCGGACGAA
GGCGGCATCG AAGTCTTCGG CGCGCCGCTG CCGCCGGGCA ATCCCAAGGC GGCGCTGGCC
GCGGGCGTGG GCATGGTGCA CCAGCACTTC ACGCTGGCCG ACAACCTCAG CGTGCTCGAC
AACGTGATGA TGGGCACCGA ACCGCTCTGG CGCCCGGTCT CGCGCCGGGC GGCCGCACGC
GCGAAGCTGC TCGAGGTGGC ACGGCGCTTC GGCCTGCCGG TGCAGCCCGA CGCGAAGATC
GGCAGCCTCT CGGTCGGCGA ACGGCAGCGC GTCGAGATCC TGAAGGCGCT GTACCGCGGC
GCGCGCATCC TGATCCTCGA CGAGCCGACC GCCGTGCTCA CGCCGCAGGA AAGCGAAGCG
CTGTTCGCCA CGCTCGCGCA GATGGTGGCG CAGGGCCTGT CGGTGATCTT CATCAGCCAC
AAGCTGGGCG AGGTGCTGCG CGTGTCGCAG CGCATCGCGG TGCTGCGCGG CGGCAAGCTG
GTGGCCGAGG CGCGCACCGC CGAAACCACG CAGGCGCAGC TCGCGCTGTG GATGGTCGGG
CATGCCGTGG AGGCGCCGCA GCGCCGGCCC GCCAGGTCGG TGGGCGACGC GGTCTGCGTG
CTCGACCATG TGAGCACCGC GTCGGACAAG GACCAGGCGC AGAACCGGCT GCGCGAGGTG
TCGCTCACGC TGCGCGCCGG CGAAATCACC GCCATCGCGG GCGTCTCGGG CAACGGCCAG
GTGGCGCTGG CCGAACTGCT GTGCGGCACG CGCCGCGCCA CCTCGGGCAC GGCCCTGCTG
ATGGGCCGCG CGCTGCCGCC CTCGCCCGCA CGGCTGGTGC AGCGCGGCGT CGCGCGCATT
CCCGAGGACC GGCACGCGGT CGGCGTGGTC GGCGACCTGC CGGTGTGGGA GAACGCGGTG
TCGGAACGGC TGCGCAGCCC CGTCTTCTCG CGCTGGTCGT GGTTCGTGCG GCGTGCGGCC
GCGCGGCTGC ATGCAGGGCG CATCGAAAAG GCGTTCGACG TGCGCGGCGC GGGGCTGATG
GCGCCGGCCC GTTCGCTTTC GGGCGGCAAC ATGCAGAAGC TGATCCTCGG GCGCGCGCTG
CTGGCGCCCG AGCAGGACGA AGAAGACCCG GACAACAGGA AATACCCGAC GCGTGCGCCG
CGCCTGATCG TTGCGCACCA GCCGACCTGG GGCCTGGACA TCGGCGCCGT CGCCTATGTG
CAGCAGCAAC TCATTGCCGC GCGCGATGCG GGTGCGGCGG TGCTGGTGAT TTCCGACGAC
CTCGACGAGG TGCTCGCGCT CGGCGATCGC GTGGCCGTGA TGCACGGCGG CCACCTCGGC
GAAGCGCGCC CGGCCGCGGC TTGGACGCGC GAAGCCATCG GGCTGGCGAT GGCCGGCGCG
GCGGCGCAGC AGCAGCAGCA GCAGCGCGCA GGGACTACGC CATGA
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| Protein sequence | MNSTTVLRLQ RITKRFGTLV ANDAISLDLH AGEVLALLGE NGAGKSTLMS ILFGHYVADE
GGIEVFGAPL PPGNPKAALA AGVGMVHQHF TLADNLSVLD NVMMGTEPLW RPVSRRAAAR
AKLLEVARRF GLPVQPDAKI GSLSVGERQR VEILKALYRG ARILILDEPT AVLTPQESEA
LFATLAQMVA QGLSVIFISH KLGEVLRVSQ RIAVLRGGKL VAEARTAETT QAQLALWMVG
HAVEAPQRRP ARSVGDAVCV LDHVSTASDK DQAQNRLREV SLTLRAGEIT AIAGVSGNGQ
VALAELLCGT RRATSGTALL MGRALPPSPA RLVQRGVARI PEDRHAVGVV GDLPVWENAV
SERLRSPVFS RWSWFVRRAA ARLHAGRIEK AFDVRGAGLM APARSLSGGN MQKLILGRAL
LAPEQDEEDP DNRKYPTRAP RLIVAHQPTW GLDIGAVAYV QQQLIAARDA GAAVLVISDD
LDEVLALGDR VAVMHGGHLG EARPAAAWTR EAIGLAMAGA AAQQQQQQRA GTTP
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