| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2651 |
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| Symbol | |
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| ID | 7972413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2792671 |
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| End bp | 2794992 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793239 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_002944542 |
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| Protein GI | 239815632 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.476477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGCCC AGGAACTGGA AGTCAGCTTG CACATGGCCT TCGTCGAGGC CAGGCAGCAG
CGCCACGAGT TCATCACCGT GGAGCATCTG TTGCTCGCTT TGCTGGACAA CCCGAGCGCC
GCAGAGGTCC TGCGCGCCTG CTCGGCCAAC GTCGACGACC TGCGGGCGTC GCTCACCAAC
TTCATCAAGG ACAACACGCC CCAGGTGGCG GGGACCGACG ATGTAGACAC CCAGCCGACG
CTGGGGTTCC AGCGCGTGAT CCAGCGCGCC ATCATGCACG TGCAGTCCAC CGGCAACGGC
AAGAAGGAAG TCACCGGCGC CAACGTGCTG GTCGCGATCT TCGGCGAGAA GGACTCGCAC
GCGGTGTACT ACCTCCACCA GCAGGGCGTG ACCCGCCTGG ACGTGGTGAA CTTCATTGCC
CACGGCATCA AGAAGAGCGA TCCGCCCGAG GCCGTCAAGG GCAGCAGCGA ATCGCCTTCG
GGCGAGGGCG AAGAGGGCGG CGCCGAAAAG AACGAGAAGG CTTCGCCGCT CGAGCAGTTC
ACGCAGAACC TCAACCAGCT TGCCAAGGAC GGCAAGATCG ATCCGCTGAT CGGCCGCGAA
TACGAGGTCG AGCGCGTCAT CCAGATCCTG TGCCGCCGGC GCAAGAACAA CCCGCTTCTG
GTGGGTGAGG CCGGCGTGGG CAAGACCGCG ATCGCCGAGG GCCTGGCCTG GCGCATCACG
CAGACCGACG TGCCCGAGAT CCTCGCCGAG GCGCAGGTCT ACTCGCTCGA CATGGGCGCG
CTCTTGGCCG GCACCAAGTA CCGCGGCGAT TTCGAGCAGC GCCTGAAGGG CGTGCTCAAG
TCGCTCAAGG ACAAGCCGAA CGCGATCCTG TTCATCGACG AGATCCACAC GCTGATCGGT
GCGGGCGCAG CCTCGGGCGG CACGCTCGAC GCGTCGAACC TGCTGAAGCC GGCGCTCTCG
AGCGGCCAGC TCAAGTGCAT CGGCGCCACC ACCTTCAGCG AATACCGCGG CATCTTCGAG
AAGGACGCGG CCCTGTCGCG CCGTTTCCAG AAGGTCGACG TGGTCGAGCC GACGGTGCAG
GAAACCGTCG ACATCCTGAA GGGCCTGAAG TCGCGCTTCG AAGAGCACCA TGGCGTCAAG
TACGCGGTGG CGGCCCTGCA GGCTGCGGCC GAGCTGAGCG CCAAGTACAT CAACGACCGC
CACCTGCCCG ACAAGGCCAT CGACGTGATC GACGAGGCCG GCGCTGCCCA GCGCATCCTG
CCGGCCAACA AGCGCAAGAA GACCATCAGC AAGACCGAGG TCGAGGACAT CGTCGCGAAG
ATCGCGCGCA TTCCCCCGGC CAACGTCAGC AACGACGACC GCGGCAAGCT GCAGACCATC
GAGCGCGACC TCAAGAGCGT GGTGTTCGGC CAGGACAAGG CGCTCGAGGT GCTGGCCTCC
GCCGTCAAGA TGGCGCGTTC GGGCCTCGGC CGCGAGGACA AGCCGATCGG CTCGTTCCTG
TTCAGCGGCC CCACCGGCGT CGGCAAGACC GAGGCGGCCA AGCAGCTGGC CTACATCATG
GGCATCGAGC TCATCCGCTT CGACATGTCC GAATACATGG AGCGCCATGC GGTGAGCCGG
CTGATCGGCG CGCCTCCGGG CTACGTCGGG TTCGACCAGG GCGGCCTCCT GACCGAAGCC
ATCACGAAGA AGCCGCACGC GGTGCTGCTG CTCGACGAAA TCGAGAAGGC GCATCCGGAC
ATCTTCAACG TGCTGCTGCA GGTCATGGAC CACGGCACCC TGACGGACAA CAACGGACGC
AAGGCCGACT TCCGCAACGT GATCATCGTG ATGACCACCA ACGCGGGTGC CGAGACCATG
AACAAGGCGA CCATCGGCTT CACCAACCCG CGCCAGGCGG GCGACGAGAT GACCGACATC
AAGCGCCTGT TCACGCCGGA GTTCCGCAAC CGCCTGGACG CGATCGTGAG CTTCAAGGCG
CTGGACGAGC AGATCATCCT GCGCGTGGTC GACAAGTTCC TGCTGCAGCT GGAAACGCAG
CTGGCCGAGA AGAAGGTCGA CGTCACGTTC AGCGACGGGC TGCGCAAGCA CCTGGCGAAG
AAGGGCTTCG ATCCGCTGAT GGGCGCCCGC CCGATGCAGC GCCTGATCCA GGACACGATC
CGCCGTGCAC TGGCCGACGA GCTGCTGTTC GGACGCCTGA TCGATGGCGG CCGCCTGTCG
GTCGACATCG ACGACAAGGG CGAAGTGCAG CTGGACATCC AGCCGCTGCC GAAGAAGGAA
GGCAAGTCCA AGCCGGAAGC CGAAGAAGCC GCTGCCGGAT AA
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| Protein sequence | MIAQELEVSL HMAFVEARQQ RHEFITVEHL LLALLDNPSA AEVLRACSAN VDDLRASLTN
FIKDNTPQVA GTDDVDTQPT LGFQRVIQRA IMHVQSTGNG KKEVTGANVL VAIFGEKDSH
AVYYLHQQGV TRLDVVNFIA HGIKKSDPPE AVKGSSESPS GEGEEGGAEK NEKASPLEQF
TQNLNQLAKD GKIDPLIGRE YEVERVIQIL CRRRKNNPLL VGEAGVGKTA IAEGLAWRIT
QTDVPEILAE AQVYSLDMGA LLAGTKYRGD FEQRLKGVLK SLKDKPNAIL FIDEIHTLIG
AGAASGGTLD ASNLLKPALS SGQLKCIGAT TFSEYRGIFE KDAALSRRFQ KVDVVEPTVQ
ETVDILKGLK SRFEEHHGVK YAVAALQAAA ELSAKYINDR HLPDKAIDVI DEAGAAQRIL
PANKRKKTIS KTEVEDIVAK IARIPPANVS NDDRGKLQTI ERDLKSVVFG QDKALEVLAS
AVKMARSGLG REDKPIGSFL FSGPTGVGKT EAAKQLAYIM GIELIRFDMS EYMERHAVSR
LIGAPPGYVG FDQGGLLTEA ITKKPHAVLL LDEIEKAHPD IFNVLLQVMD HGTLTDNNGR
KADFRNVIIV MTTNAGAETM NKATIGFTNP RQAGDEMTDI KRLFTPEFRN RLDAIVSFKA
LDEQIILRVV DKFLLQLETQ LAEKKVDVTF SDGLRKHLAK KGFDPLMGAR PMQRLIQDTI
RRALADELLF GRLIDGGRLS VDIDDKGEVQ LDIQPLPKKE GKSKPEAEEA AAG
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