| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2632 |
|---|
| Symbol | |
|---|
| ID | 7972394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2776825 |
|---|
| End bp | 2778345 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793220 |
|---|
| Product | 3-hydroxy-acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_002944523 |
|---|
| Protein GI | 239815613 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0312276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTCA ACTACACCCG GATCGGCGTC GTCGGCGCCG GCGCCATGGG CCGAGGCATC
GCACAGATCG CGGCCCAGGC GGGCAGCGAA GTGCTGCTGC TCGACAGTTT TGCAGGTGCC
GCCGAACGCG GGCGCGAAGC CCTCGCGGCC CAATGGAACA AGCTGCACGA GAAGGGCAAG
ATCGACGCCG CGGCGCGCGA TGCGCAAATC GCCCGCGTGA AGGCGGTCGA CTCGGTCGGG
GCACTGGCCC AGTGCGACCT GGTCATCGAA GCGGTGGTCG AAGACCTCGA AGTCAAGCGC
AAGCTGTTCC GCGAACTCGA AACAGTGGTC GCGCCCACGA CCACGCTGGC CACCAACACC
TCGTCGCTGT CGGTCACGGC CATTGCGGCC GGGCTCGCGC ATCCGGAGCG CGTGGCGGGC
TTTCACTTCT TCAACCCGGT GCCGCTGATG AAGGTGGTCG AGGTGGTGGC CGGCTTCAAG
ACTTCGGCCG AGGTCTGCAA GCAGCTCGCG GGCTATGCGG TGCAGATGGG CCACAGCGCC
GTGCAGGCGC AGGACACGCC GGGCTTCATC GTCAACCACG CGGGCCGCGG CTACGGCACG
GAAGCACTGC GCATCGTCGG CGAAGGCGTG GCCGATTTCG CCACCATCGA CCGCATCCTG
AAGGAGCAGG CCGGCTTTCG CCTGGGCCCC TTCGAGCTGA TGGACCTGAC CGCGCTCGAT
GTGTCGCATC CGGTGATGGA ATCGATCTAC CACCAGTACT ACGAGGAGCC GCGCTTCCGT
CCGAGCGTGA TCACCGCCCA GCGGCTGGCG GCCGGCGTGC TGGGCCGCAA GACCAATGAA
GGCTTCTACC GCTACAACGA CGGCGTGATG CAGCAGCCCG CCGAGCCGGC GGTGCCGGTG
GTGGCGGCGA TGCCCTCGGT CTGGGTTTCG CCGCGCGCTG CGCGCCGGGC CGAGCTGCTG
CGGCTGGTGA ACGCACTGGG CGCGCAGATC GACAGCGGCG CCACGGCGGC GCCCACGTCG
CTGATCCTGG TGGCCCCGCT GGGCTTCGAC GTGACCACGG TGGCCGCGGT CGAGCGGCTG
GACGCCACGC GCACGATGGG CATCGACATG CTGATCGACG ATGCCGCCAC CAAGCGCCGC
GTGCTCGCCA CCAACCCCGC CACGCGGCGC GACATCCGCG ATGCGGCGCA TGCGCTCTTC
GCGCGCGATG CAAAGGCGGT GAGCGTGATC CGCGACAGCG GCGGCTTCGT GACGCAGCGC
GTGATCGGCA CCATCGTGAA CATTGCCGCC GACATGTGCC AGCAGCGCGT CTGCTCGCCG
GCCGACCTCG AAACCGCGGT CCAGCTGGGC CTGGGCTATC CGCGCGGCCC GCTGGCCATG
GGCAACCTGT ACGGCCCGAC CAACATGCTC GAAGTGCTGT TCAACCTGCA GACCGTCTAC
GGCGATCCGC GCTACCGCCC CAGCCCCTGG CTGCGCCGCC GCGGTGCGAT CGGCCTGAGC
CTGCTGCACG AAGAAGAATA A
|
|---|
| Protein sequence | MTVNYTRIGV VGAGAMGRGI AQIAAQAGSE VLLLDSFAGA AERGREALAA QWNKLHEKGK
IDAAARDAQI ARVKAVDSVG ALAQCDLVIE AVVEDLEVKR KLFRELETVV APTTTLATNT
SSLSVTAIAA GLAHPERVAG FHFFNPVPLM KVVEVVAGFK TSAEVCKQLA GYAVQMGHSA
VQAQDTPGFI VNHAGRGYGT EALRIVGEGV ADFATIDRIL KEQAGFRLGP FELMDLTALD
VSHPVMESIY HQYYEEPRFR PSVITAQRLA AGVLGRKTNE GFYRYNDGVM QQPAEPAVPV
VAAMPSVWVS PRAARRAELL RLVNALGAQI DSGATAAPTS LILVAPLGFD VTTVAAVERL
DATRTMGIDM LIDDAATKRR VLATNPATRR DIRDAAHALF ARDAKAVSVI RDSGGFVTQR
VIGTIVNIAA DMCQQRVCSP ADLETAVQLG LGYPRGPLAM GNLYGPTNML EVLFNLQTVY
GDPRYRPSPW LRRRGAIGLS LLHEEE
|
|---|
| |