| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2623 |
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| Symbol | |
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| ID | 7972385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2767241 |
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| End bp | 2767909 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793211 |
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| Product | ribosomal RNA methyltransferase RrmJ/FtsJ |
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| Protein accession | YP_002944514 |
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| Protein GI | 239815604 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0293] 23S rRNA methylase |
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| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.654076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCA AAGCCAAAAG CAAAAAAGTC AACAAAGCCT GGCTGCACGA CCACATCAAC
GACCCGTATG TGAAACTGGC CACGCGCGAG GGATACCGCG CACGCGCCGC CTACAAGCTC
AAGGAAATCG ACGAATCGCT CGGGCTGGTC AAGCCGGGCC AGCTGGTGGT CGACCTGGGT
TCCACGCCCG GAGCCTGGAG CCAGTACCTG CGCCGGCGCA TGTCGCCCGA GGGCGCCGCG
GCCGGCGAGC TGAACGGCAC CATCATTGCG CTGGACATCC TGCCGATGGA GCCGATCGAG
GGCGTGACCT TCCTGCAGGG CGATTTCCGC GAGGCGGAAC TGCTGGAACA GGTGCTGGGC
GTGCTGGCCG GCCGGAAGGC CGACCTGGTG GTTTCCGACA TGGCCCCGAA CCTGTCGGGC
ATCCATTCGG CCGATGCGGC CCGCGTGGCG CACCTGATCG AGCTGGCCAT CGACTTTGCC
CAGCACCACC TGAAGCCCGA GGGGGCACTG GTGGCCAAGC TCTTCCATGG CAGCGGCTAT
GACGAGCTGG TGAAGCTGTT CAAGGCGAAC TTCCGCACCG TGAAGCCCTT CAAACCCAAG
GCCTCGCGTG ACAAATCATC GGAAACCTTC CTTGTCGGCA TGGGTCTGAA GGCTCAGGAA
ACGCTTTGA
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| Protein sequence | MSTKAKSKKV NKAWLHDHIN DPYVKLATRE GYRARAAYKL KEIDESLGLV KPGQLVVDLG
STPGAWSQYL RRRMSPEGAA AGELNGTIIA LDILPMEPIE GVTFLQGDFR EAELLEQVLG
VLAGRKADLV VSDMAPNLSG IHSADAARVA HLIELAIDFA QHHLKPEGAL VAKLFHGSGY
DELVKLFKAN FRTVKPFKPK ASRDKSSETF LVGMGLKAQE TL
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