| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2607 |
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| Symbol | |
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| ID | 7972369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2750976 |
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| End bp | 2753411 |
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| Gene Length | 2436 bp |
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| Protein Length | 811 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793195 |
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| Product | outer membrane protein assembly complex, YaeT protein |
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| Protein accession | YP_002944498 |
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| Protein GI | 239815588 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.745531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACAA ACTTCAGTCG CTTTCGCCTG CGTAGCGTTG CCGCGGTGGT GGCCAGCGCG
TTGGCGGCCA CGGCAGCCTG GGCCGTCGAG CCCTTCACGG TGCGTGACAT TCGCGTCGAG
GGCCTCCAAC GCGTCGAGCC CGGCACGATC TTCGCATCGC TGCCGCTGCG AGTGGGCGAT
ACCTACAGCG ACGAGCGCGG ATCGGCCGCC ATCCGTGCGC TGTTCGACCT GGGGTTGTTC
AAGGATGTGC GCATCGACGT CAACGGCAAC GTGCTGGTGG TGATCGTCGA GGAGCGTCCC
ACCATTGCCG ACGTCGATTT CGTCGGCGCC AAGGAATTCG ACAAAGCCGC GCTCCAGAAG
GCGCTGCGCG AAGTGGGCCT GGCCGATGGC CGACCCTACG ACAAGGCGCT GGCCGACCGC
GCCGAGCAGG AGCTCAAGCG CCAGTACGTG AGCCGCAGCC TCTACAACGC GCAGGTCGTG
ACCACGGTCA CGCCCATCGA GCGCAACCGC GTCAATCTCA CGTTCACCGT CACCGAAGGC
GATTCCGCAC GCATCCGCGA AGTGCGCGTG GTCGGCAACA AGGCCTTCAG CGAATCGACG
CTCCTGAGCC TGTTCGACCA GGACAGCGGC GGCTTCATGA GCTGGTACAC CAAGTCCAAC
CAGTACTCGC GCTCCAAGCT CAACGCCGAC CTCGAAACGC TGCGCTCGTA CTACATCACG
CGCGGCTACC TCGAGTTCCG CATCGATTCG ACCCAGGTCG CCATCTCGCC GGACCGCAAG
GACCTGTCGG TGACCGTCAA CATCACGGAA GGCGAGAAGT TCGTGGTGGC CGGCGTCAAG
CTCGACGGCA ACTATCTCGG CCGCGACGAG GAGTTCAAGT CCCTCGTGAC CATCAAGCCC
GGCGAGCCCT ACAACGGCGA GCAGGTCACC GAAACCACCA AGGCCTTCAC CGACTATTTC
GGCACCTTCG GCTATGCGTT CGCGCGCGTG CAGGCACGCC CGGAAATCGA CCGCGTCAAC
AACCGCGTCA CCCTGACCCT GCAAGCCGAG CCCTCGCGCC GCGTCTATGT GCGCCGCGTG
GCGGTGGGCG GCAACGCCAA GACGCGCGAC GAAGTGATCC GGCGCGAGTT CCGCCAGTTC
GAGGCCTCGT GGTACGACGG CGACAAGATC AAGCTCTCGC GCGACCGCGT GGACCGCCTG
GGCTTCTTCA CCGAAGTGAA CGTCGAAACC CAGGAAATCC CGGGCTCGCC CGACCAGGTC
GACCTGGTCG TCAACGTGGC GGAAAAGCCC ACCGGCAGCC TGCAGCTGGG CGCCGGCTAC
TCGAGCGCGG AAAAGGTGGC TCTCACCTTC GGCATCTCGC AGGAGAACGT CTTCGGTTCG
GGCAACTTCC TGGGCGTGCA GGTCAACACC AGCAAGTACA ACCGCACGCT GTCGCTGACC
ACCACCGATC CGTACTTCAC GAAGGACGGC ATCTCGCGCA CGATCAGCGT CTATCACACC
ACCACGCGCC CGTATTCGAC CAACATCGAC GGCGACTACA AGCTGGTGAA CCAGGGCGCC
TCGATCCGCT TCGGCGTGCC GTTCAGCGAA GTCGACACGG TCTTCTTCGG TGTCGGGCTC
GAGCGCTACG CCTTCGATCC GAACACGTCG ACCTCGTTCT CGGGACTCTT CACGCCGGCG
TCCTACCTGC GCTACTTCCA GTGCTCGAAG GATGCGACCG GCTTGTTCGT GACCGGGTGC
GACCAGAAGA GCGTGTGGGG CGTGCCGCTC ACTGTCGGCT GGGGCCGCGA CAGCCGCGAC
AGCGCGCTGG TTCCGACCAC CGGCCGGCTG CAGCGTGCCA ACCTGGAACT GGGCGCCGCC
GGCGACATGA AGTACGTCAA GACGAACTAC CAGTACCAGC AGTTCTTCGC GATCAACAAG
CAGTACACCT TTGCGATCAA CGCCGACGTG GGCTATGCCA AGCCCCTGGG CGGCAAGGTC
TACCCGATCT TCAAGAACTT CTATGCCGGC GGCCTGGGTT CCATCCGCGG CTTCGAGCAG
AACTCGCTCG GCCCGCGCGA CGTGCCGCTC CTCGGCCAGA CCGAAGGCGC CGCGCTGGGT
GGCACCAAGA AGGCCGTCTT CAACGCCGAG CTCAGCACGC CGTTCCCCGG TGCGGGCAAC
GACCGCACGC TGCGGCTGTA CACCTTCTTC GATGTCGGCA ACGTGTTCGG TTCGCGCGCC
CCGGGCCTCA CCGACGAGCA GTACAAGGCG CAGAAGAAGC TGCGCGCCTC GGTGGGTCTC
GGGATCAGCT GGATCTCGCC GCTGGGCCCG CTGCGCATCG CCTACGCCTT CCCCATCAAG
TCCCAAAAGG AAGTGCTGGA TCCGAATACC GGCCTCACTG TGATCCCGAA GGATAGAATC
CAGCGCTTGC AATTCCAGAT CGGAACGTCT TTCTAA
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| Protein sequence | MNTNFSRFRL RSVAAVVASA LAATAAWAVE PFTVRDIRVE GLQRVEPGTI FASLPLRVGD
TYSDERGSAA IRALFDLGLF KDVRIDVNGN VLVVIVEERP TIADVDFVGA KEFDKAALQK
ALREVGLADG RPYDKALADR AEQELKRQYV SRSLYNAQVV TTVTPIERNR VNLTFTVTEG
DSARIREVRV VGNKAFSEST LLSLFDQDSG GFMSWYTKSN QYSRSKLNAD LETLRSYYIT
RGYLEFRIDS TQVAISPDRK DLSVTVNITE GEKFVVAGVK LDGNYLGRDE EFKSLVTIKP
GEPYNGEQVT ETTKAFTDYF GTFGYAFARV QARPEIDRVN NRVTLTLQAE PSRRVYVRRV
AVGGNAKTRD EVIRREFRQF EASWYDGDKI KLSRDRVDRL GFFTEVNVET QEIPGSPDQV
DLVVNVAEKP TGSLQLGAGY SSAEKVALTF GISQENVFGS GNFLGVQVNT SKYNRTLSLT
TTDPYFTKDG ISRTISVYHT TTRPYSTNID GDYKLVNQGA SIRFGVPFSE VDTVFFGVGL
ERYAFDPNTS TSFSGLFTPA SYLRYFQCSK DATGLFVTGC DQKSVWGVPL TVGWGRDSRD
SALVPTTGRL QRANLELGAA GDMKYVKTNY QYQQFFAINK QYTFAINADV GYAKPLGGKV
YPIFKNFYAG GLGSIRGFEQ NSLGPRDVPL LGQTEGAALG GTKKAVFNAE LSTPFPGAGN
DRTLRLYTFF DVGNVFGSRA PGLTDEQYKA QKKLRASVGL GISWISPLGP LRIAYAFPIK
SQKEVLDPNT GLTVIPKDRI QRLQFQIGTS F
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