| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2606 |
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| Symbol | |
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| ID | 7972368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2749567 |
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| End bp | 2750937 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793194 |
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| Product | membrane-associated zinc metalloprotease |
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| Protein accession | YP_002944497 |
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| Protein GI | 239815587 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.514268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTACCG TCATCGCTTT CGTGGTTGCA CTCGGCCTCC TGATCGCCGT GCATGAATAC
GGCCACTACC GCGTTGCCGT CGCCTGCGGC GTCAAGGTGC TGCGGTTTTC GGTGGGCTTC
GGCAAGACGC TCTACCGCTG GCAGCCCAGG CGCCAGCATC CGGGGCAGGA AACCGAGTTC
GTCATCGGCG CGTTTCCCTT CGGCGGCTAC GTCAAGATGC TCGACGAGCG CGAGGGGCCG
GTGGCGCCCG AGGAGCGGCA CCGCGCCTTC AACACGCAGC CGCTGCGCTC CCGCGCGGCC
ATCGTCGCTG CCGGGCCCAT TGCCAATCTG CTGCTCGCCG TGGTGCTCTA CACGGCCGTC
AACTGGATCG GGGTCGAGGA GCCTGTTGCC AAGCTGGCGC GTCCGGTGGC GGCATCGCTG
GCGGAAGCGG CGGGCCTGCG CGGCGGCGAG CACATCACGC GCGCCGGCTT CGAAGGCGAG
CTGGAGCCCG TGCAGTCGTT CGAGGACCTG CGCTGGCGCA TGACGCGCGG CGCGCTCGAC
GGCCGCGACC TGACGCTCGA AGTGGCGGGC GAGGGCGGCC GGCCCGGCCG CCAGGTCGTG
CTGCCGCTCG GCCTCATGGA GGCCAAGGAC GCCGACCCGC AGATGTTCCG CAAGATCGGC
GTGCTCGCAC CGCTGACGCG CCCCGAGATC GGCCAGGTGA TGGCCGGCAG CGCGGCAGAA
CGCGCGGGCC TTCGCAGCGG CGATGTGGTC CGCAGCGTCG GCAATGTGCC CATCGTCGAT
GGACAGCAGC TGCGCGAGGC GATCCGCACC TCGATCGATG GCGACCAGCC GCGCACGCAG
ACCTGGCAGG TGCAGCGCGG CAGCCAGTCG ATCGAATTGG AAGTCAGGCC CGAACTGCGC
GAGGAGGGCG CCGCGAAGGT CGGCCGCATC GGCGCCTATG TCGGTGCGCC TCCCGAAATG
GTGACGGTGC GCCAAGGCCC GATCGACGGC GTCTGGCGCG GCATCGTGCG CACCTGGGAG
GTGTCGGCGC TGACCGTCCG CATGATGGGC AAGATGGTGA TCGGCGAAGC CTCGCTCAAG
AATCTGAGCG GGCCGCTCAC GATTGCCGAC TACGCCGGCA AGTCCGCGAG CCTCGGGCTG
ACCCAGTACC TGGTGTTCCT TGCACTGATC AGCGTGAGCC TTGGCGTGCT CAATCTCATG
CCGCTGCCGG TCCTCGATGG GGGACACCTG ATGTATTATC TTTGGGAGGG CCTGACCGGC
AAGAGCGTCT CTGACGCCTG GATGGAACGG CTTCAGCGCG GCGGTGTCGC TTTGCTGCTG
GTCATGATGT CGGTTGCGCT CTTCAACGAC GTCACGCGGC TCTTTGGTTA A
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| Protein sequence | MLTVIAFVVA LGLLIAVHEY GHYRVAVACG VKVLRFSVGF GKTLYRWQPR RQHPGQETEF
VIGAFPFGGY VKMLDEREGP VAPEERHRAF NTQPLRSRAA IVAAGPIANL LLAVVLYTAV
NWIGVEEPVA KLARPVAASL AEAAGLRGGE HITRAGFEGE LEPVQSFEDL RWRMTRGALD
GRDLTLEVAG EGGRPGRQVV LPLGLMEAKD ADPQMFRKIG VLAPLTRPEI GQVMAGSAAE
RAGLRSGDVV RSVGNVPIVD GQQLREAIRT SIDGDQPRTQ TWQVQRGSQS IELEVRPELR
EEGAAKVGRI GAYVGAPPEM VTVRQGPIDG VWRGIVRTWE VSALTVRMMG KMVIGEASLK
NLSGPLTIAD YAGKSASLGL TQYLVFLALI SVSLGVLNLM PLPVLDGGHL MYYLWEGLTG
KSVSDAWMER LQRGGVALLL VMMSVALFND VTRLFG
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