| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2605 |
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| Symbol | |
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| ID | 7972367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2748355 |
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| End bp | 2749542 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793193 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_002944496 |
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| Protein GI | 239815586 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACACAC CCAAACAACG CATCACGGTG CTGGGCTCGA CCGGATCGGT CGGCGTCAGC
ACGCTCGATG TCATTTCGCG GCACCCGGAG CGTTTCGAGG TCTTCGCGCT TTCCGCGTCG
ACCAAGGTCG ACGAGCTGCT GGCGCAGTGC GCGCGGTTTT CGCCGCGCTA TGCGGTCATG
GCGAGCGCGC CGCATGCGGC GCTGCTGGCC GAAAAGATAG AACAGAACAA TCTCAAGACT
ACCGTCCTGA GTGGCGGCGA TGCTATTGAA AAAATAGCAT CCCACGAAGA GGTCGATGCC
GTGATGGCGG CCATCGTGGG GGCGGCCGGC CTCGGGCCCT GCCTGGCCGC GGCGCGCGCC
GGCAAGCGGC TCCTGCTGGC CAACAAGGAG GCGCTGGTGG TCGGCGGCGA GCTCTTCATG
CGCACCGTGC GCGAAGGCGG TGCCACGCTG CTGCCGATCG ACAGCGAACA CTCGGCCATC
TTCCAGTCGC TGCCCGAAGA TCCGTCGACC TGGCCGCGCC GCATCGACAA GATCATTCTC
ACGGCATCGG GCGGCCCGTT CCGCACGCGC GCGCCCGACA CGCTGGGCAC GGTCACGCCC
GAGCAGGCCT GCGCGCATCC GAACTGGGTC ATGGGCCGCA AGATCTCGGT CGATTCCGCC
ACCATGATGA ACAAGGCGCT CGAGGTGATC GAGGCGCGCC ATCTGTTCGG CGTGCTGCCC
GAGCAGATCG AGGTGGTGAT CCATCCCCAG AGCGTGGTGC ATTCGATGGT CCAGTTCACC
GATGCATCGG TCATTGCCCA ACTGGGAACG CCCGACATGC GGGTGCCCAT CGCGGTCGGA
CTGGCCTGGC CCGAGCGCAT CGAGAGCGGC GCGGCGCGGC TGGATTTCCG CCGGATGGCG
TCGCTGAGCT TCGACGCGCC CGATGCGGCG CTGTTTCCAG GGCTCGGCCT GGCCTGGCAT
GCGCTGCGCG CGGCGCCGGG GACCACGGCG GTGCTCAATG CCGCCAATGA AGTCGCGGTC
GAGGCCTTTC TTGATCGGCG CCTGCGCTTC GACCGCATTC ATGCGGTCAA CATGGAAACT
TTGGAAACCG TCAGCCCCTC CAAGCCCGCA TCGCTGGCCG ACCTGCTGGC GCTCGACGCC
AGCGCCCGGG CGGCGGCCAA TGCCGCGGCG CTGCGCTTCG CGGCCTGA
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| Protein sequence | MNTPKQRITV LGSTGSVGVS TLDVISRHPE RFEVFALSAS TKVDELLAQC ARFSPRYAVM
ASAPHAALLA EKIEQNNLKT TVLSGGDAIE KIASHEEVDA VMAAIVGAAG LGPCLAAARA
GKRLLLANKE ALVVGGELFM RTVREGGATL LPIDSEHSAI FQSLPEDPST WPRRIDKIIL
TASGGPFRTR APDTLGTVTP EQACAHPNWV MGRKISVDSA TMMNKALEVI EARHLFGVLP
EQIEVVIHPQ SVVHSMVQFT DASVIAQLGT PDMRVPIAVG LAWPERIESG AARLDFRRMA
SLSFDAPDAA LFPGLGLAWH ALRAAPGTTA VLNAANEVAV EAFLDRRLRF DRIHAVNMET
LETVSPSKPA SLADLLALDA SARAAANAAA LRFAA
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