| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2590 |
|---|
| Symbol | rimO |
|---|
| ID | 7973797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2732558 |
|---|
| End bp | 2733964 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644793178 |
|---|
| Product | ribosomal protein S12 methylthiotransferase |
|---|
| Protein accession | YP_002944482 |
|---|
| Protein GI | 239815572 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.58458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAG TTGCCTCCCC CGAACGTGCC GCCACGACGG CCGCCCCCAA AGTCGGCTTT
GTGAGCCTGG GCTGCCCCAA GGCCCTGACC GATTCCGAAC TGATCCTGAC CCAGCTGAGC
GCCGAGGGCT ACCAAACGGC CAAGACCTTC GAGGGCGCCG ACCTGGTGAT CGTCAACACC
TGCGGCTTCA TCGACGATGC CGTGAAGGAA AGCCTGGACA CCATCGGCGA GGCGCTGGCG
GAAAACGGCC GCGTGATCGT CACGGGCTGC CTGGGCGCCA AGACCGGCGA CCAGGGCGGC
AACCTGGTGC GGCAAATGCA TCCGAGCGTG CTGGCCGTGA CCGGTCCGCA TGCCACGCAG
GAAGTGATGG ACGCGGTCCA CGCCAACCTG CCGAAGCCGC ACGACCCGTT CGTCGACCTG
GTGCCCAACA CCTTCGGCAT CGCGGGCCTC AAGCTCACGC CGCGGCACTA TGCCTATCTG
AAGATCAGCG AAGGCTGCAA CCACCGCTGC ACCTTCTGCA TCATTCCCTC GATGCGCGGC
GACCTGGTGT CGCGGCCGGT CGGCGACGTG CTCGGCGAGG CCAAGGCCCT GTTCGAAGGC
GGCGTGAAGG AACTGCTGGT GATCAGCCAG GACACCTCGG CCTATGGCGT GGACGTCAAG
TACCGCACCG GCTTCTGGGA CGGCAAGCCG GTCAAGACGC GCATGCTCGA ACTGGTGCGC
ACGCTGGGCG AAATTGCCGA GCCTTATGGC GCCTGGGTCC GGCTCCACTA TGTGTATCCG
TATCCGAGCG TGGACGAGAT CATTCCGCTG ATGGCCAGCG GCCAGGTGCT GCCTTACCTC
GATGTGCCGC TGCAGCACAG CCACCCCGAC GTGCTCAAGC GCATGAAGCG GCCGGCCAGC
GGCGAGAAGA ACCTGGAGCG CCTGGCGCGG TGGCGCGAGG TCTGCCCCGA GCTGGTGATC
CGCAGCACCT TCATCGCGGG CTTCCCTGGC GAAACCGAGC AGGAGTTCGA GCACTTGCTC
GACTTCATCC GCGAGGCGCA GATCGACCGC GCCGGATGCT TCGCCTACAG CCCTGTGGCA
GGCGCCACCG CCAACGACAT CCCCGGCATG CTGCCGCCGG CGGAGCGTGA AGCGCGCCGC
GCCCGCTTCA TGGAAGTGGC CGAAGCGGTG TCGATCGCCA AGCTGCGCCA GCGCATCGGT
GCAACCATGC AGGTGCTGGT GGACTCGGCA CCCGGCATGG GGCGCAAGGG CGGCGTGGGC
CGCACCTACG CCGACGCCCC CGAGATCGAC GGCACCGTGC GCCTGCTGCC GCCCGAGAAG
ATCAGCAAGA CGCTCAAGGT GGGTGAATTC ACGCGGGCCC GCATCGTGGG CGCCGAGGGC
CACGACCTGA TCGCGCTGCC GATCTGA
|
|---|
| Protein sequence | MSEVASPERA ATTAAPKVGF VSLGCPKALT DSELILTQLS AEGYQTAKTF EGADLVIVNT
CGFIDDAVKE SLDTIGEALA ENGRVIVTGC LGAKTGDQGG NLVRQMHPSV LAVTGPHATQ
EVMDAVHANL PKPHDPFVDL VPNTFGIAGL KLTPRHYAYL KISEGCNHRC TFCIIPSMRG
DLVSRPVGDV LGEAKALFEG GVKELLVISQ DTSAYGVDVK YRTGFWDGKP VKTRMLELVR
TLGEIAEPYG AWVRLHYVYP YPSVDEIIPL MASGQVLPYL DVPLQHSHPD VLKRMKRPAS
GEKNLERLAR WREVCPELVI RSTFIAGFPG ETEQEFEHLL DFIREAQIDR AGCFAYSPVA
GATANDIPGM LPPAEREARR ARFMEVAEAV SIAKLRQRIG ATMQVLVDSA PGMGRKGGVG
RTYADAPEID GTVRLLPPEK ISKTLKVGEF TRARIVGAEG HDLIALPI
|
|---|
| |