| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2587 |
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| Symbol | |
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| ID | 7970064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2728975 |
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| End bp | 2731218 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793174 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_002944479 |
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| Protein GI | 239815569 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.111478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCGCG AGTCTTCGAG TCTTCAAACG GCGCACGCCT CCGATACGGC GGTGGTGGAC
TATCCCTTGT CCGCTGCCAC GGCCGACCGC ACGCCGGTCA TGGAGAACAT GCTCGCCCGT
GCACGCGCTT TCGCCGAGCC GCTGATCGCC GACGAAAAGC TCGACACCGG CGAGAACACG
CTGGCGCATG CCGATGCCGT CGCCGCCATC GTCGCCAAGA TGGGTGGCTC CGAGGCCATG
CAGGCTGCGA GCTACCTGGT CTACGCCTGC CAGCACCTCA ACCGCCCGCA GGAGGTGATC
GCCAAGGTGT TCGGCGACAA CTTCGCGGCG CTGGCGGTCG AAACCACCAA GCTGGTGCGC
GTGCAGGAGC AGGCCCGCTC GGCTTCGCAG GGCCATCACC TGGCCGAAGG CGCAGCGGGT
GCGCAGACCG AGAACGTGCG CAAGATGCTG CTCGCGTTCT CGCGCGACCT GCGCGTGGTC
ATGCTGCGCC TCGCATCGCG GCTGCAGACC CTGCGGCACG CCGCCGCCAG CAAGCAGCCG
GCGCCCGAAA GCGTGGCGCG CGAGTCGCTG CAGGTGTTCG CGCCGCTCGC CAACCGGCTC
GGCATCTGGC AGGTGAAGTG GGAGATCGAA GACCTCTCGT TCCGCTTCCT GGAGCCCGAG
ACCTACAAGC TGATTGCGCG CCTGCTCGAC GAGAAGCGTG TCGAGCGCGA AGGCCACGTC
GAGCAGCTGC GCTCACAGCT CGAACGCGAG CTGCAGGCCG AGGGCGTGCG CGCCACGGTG
CAGGGGCGGC CCAAGAACAT CTACAGCATC GTCAAGAAGA TGCGCGGCAA GTCGCTCGAC
TTTGCGCAGG TGTTCGACAT CCTCGCGCTG CGCGTGGTGG TGCCCGACGT GAAGGACTGC
TACGCGGCGC TGGCCTGGGT GCACTCGCAC TTCCTGCCGA TCGACGAAGA GTTCGACGAC
TACATCGCGC GGCCCAAGCC CAACGGCTAC CAGTCGCTGC ACACAGTGGT GCGCGAGATG
GTCGACGGCA AGCCCGGCAA GCCGATCGAG ATCCAGATCC GCACCGAAGA AATGCACGAC
CATGCCGAGC ACGGCGTGGC GGCGCACTGG GCCTACAAGG AGGCCGGGCA CAAGGGCTAT
GCGGGCGTGT GGGCGAGCGG CGAATACGAC GCGAAGATCG CCGTGCTGCG GCAACTGCTG
GCATGGGAGC GCGACCTTTC GGGCGGCTCG CAGGGCCAGG GGCTTTTCGA CGACCGCATC
TACGTGCTCA CGCCCGACGC GGCCATCGTC GAACTGCCGC AGGGCGCAAC GCCGGTCGAC
TTTGCCTACA CCGTGCACAC CACGCTGGGC CACCGCTGCC GCGGAGCGCG CGTCGATGGG
GCCATGGTGC CGCTCAACAC GCCGCTGTCG AACGGCCAGA CGGTGGAGAT CATCGCGGCC
AAGGAGGGCG GGCCTTCGCG CGACTGGCTC AATGCCGAGC TCGGCTACCT TGCAAGCCAC
CGCGCGCGCG CCAAGGTGCG CGCATGGTTC AACGCGCAGA TCACGCACGA AACCGTGGCG
CGCGGGCGCG AGGCGGTCGA GAAGCTGCTG CAGCGCGAAG GCAAGACCTC CACGCGCCTC
GAGGACCTGG CTTCTCAGCT GGGCTTCAAG TCGGCGGACC ACTTGTTCGA AGTGGTCGGC
AAGGACGAGT TCTCGCTGCG CAACATCGAG GTGCTGCTGC GTCCGCCCGA GCCCGCGCCC
AACCCCGACG ACGGCGTGCA GATCAAGAAG CCGCGCGCGA GCGAGAAGTC CGGCAAGGGC
GGTGTGCTGG TGGTGGGCGT GTCTTCGCTG ATGACGCAGC TCGCCAAGTG CTGCAAGCCC
GCGCCGCCCG ATGCCATCCG CGGCTTCGTG ACGCGCGGCC ACGGCGTGAG CGTGCACCGC
GTCGACTGCA GCAACTTCCG CATGATGGCC TCGCGCGACA GCGAGCGCGT GATCGATGTC
GAATGGGGCG CCGCGAAGGG CGGCGAAGCG CCGGTCTATG CAGTCGACGT GTCCGTCGAG
GCGGCCGACC GCCAGGGCCT GCTGCGCGAC ATCTCCGATG TGTTCGCACG CGAGAAGATG
AACGTGATCG GCGTGCAGAC CCAATCGGTC AAGGGCACGG CATGGATGAC CTTCACCGTG
GAAATCTCCG ATGCGGCGCG GCTCACGCAG GTGCTGGGCG TGGTGACGGC GGTTGCCGGT
GTGCGATCTG CACGTCGGCG CTGA
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| Protein sequence | MKRESSSLQT AHASDTAVVD YPLSAATADR TPVMENMLAR ARAFAEPLIA DEKLDTGENT
LAHADAVAAI VAKMGGSEAM QAASYLVYAC QHLNRPQEVI AKVFGDNFAA LAVETTKLVR
VQEQARSASQ GHHLAEGAAG AQTENVRKML LAFSRDLRVV MLRLASRLQT LRHAAASKQP
APESVARESL QVFAPLANRL GIWQVKWEIE DLSFRFLEPE TYKLIARLLD EKRVEREGHV
EQLRSQLERE LQAEGVRATV QGRPKNIYSI VKKMRGKSLD FAQVFDILAL RVVVPDVKDC
YAALAWVHSH FLPIDEEFDD YIARPKPNGY QSLHTVVREM VDGKPGKPIE IQIRTEEMHD
HAEHGVAAHW AYKEAGHKGY AGVWASGEYD AKIAVLRQLL AWERDLSGGS QGQGLFDDRI
YVLTPDAAIV ELPQGATPVD FAYTVHTTLG HRCRGARVDG AMVPLNTPLS NGQTVEIIAA
KEGGPSRDWL NAELGYLASH RARAKVRAWF NAQITHETVA RGREAVEKLL QREGKTSTRL
EDLASQLGFK SADHLFEVVG KDEFSLRNIE VLLRPPEPAP NPDDGVQIKK PRASEKSGKG
GVLVVGVSSL MTQLAKCCKP APPDAIRGFV TRGHGVSVHR VDCSNFRMMA SRDSERVIDV
EWGAAKGGEA PVYAVDVSVE AADRQGLLRD ISDVFAREKM NVIGVQTQSV KGTAWMTFTV
EISDAARLTQ VLGVVTAVAG VRSARRR
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