Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2587 |
Symbol | |
ID | 7970064 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2728975 |
End bp | 2731218 |
Gene Length | 2244 bp |
Protein Length | 747 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793174 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_002944479 |
Protein GI | 239815569 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.111478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGCGCG AGTCTTCGAG TCTTCAAACG GCGCACGCCT CCGATACGGC GGTGGTGGAC TATCCCTTGT CCGCTGCCAC GGCCGACCGC ACGCCGGTCA TGGAGAACAT GCTCGCCCGT GCACGCGCTT TCGCCGAGCC GCTGATCGCC GACGAAAAGC TCGACACCGG CGAGAACACG CTGGCGCATG CCGATGCCGT CGCCGCCATC GTCGCCAAGA TGGGTGGCTC CGAGGCCATG CAGGCTGCGA GCTACCTGGT CTACGCCTGC CAGCACCTCA ACCGCCCGCA GGAGGTGATC GCCAAGGTGT TCGGCGACAA CTTCGCGGCG CTGGCGGTCG AAACCACCAA GCTGGTGCGC GTGCAGGAGC AGGCCCGCTC GGCTTCGCAG GGCCATCACC TGGCCGAAGG CGCAGCGGGT GCGCAGACCG AGAACGTGCG CAAGATGCTG CTCGCGTTCT CGCGCGACCT GCGCGTGGTC ATGCTGCGCC TCGCATCGCG GCTGCAGACC CTGCGGCACG CCGCCGCCAG CAAGCAGCCG GCGCCCGAAA GCGTGGCGCG CGAGTCGCTG CAGGTGTTCG CGCCGCTCGC CAACCGGCTC GGCATCTGGC AGGTGAAGTG GGAGATCGAA GACCTCTCGT TCCGCTTCCT GGAGCCCGAG ACCTACAAGC TGATTGCGCG CCTGCTCGAC GAGAAGCGTG TCGAGCGCGA AGGCCACGTC GAGCAGCTGC GCTCACAGCT CGAACGCGAG CTGCAGGCCG AGGGCGTGCG CGCCACGGTG CAGGGGCGGC CCAAGAACAT CTACAGCATC GTCAAGAAGA TGCGCGGCAA GTCGCTCGAC TTTGCGCAGG TGTTCGACAT CCTCGCGCTG CGCGTGGTGG TGCCCGACGT GAAGGACTGC TACGCGGCGC TGGCCTGGGT GCACTCGCAC TTCCTGCCGA TCGACGAAGA GTTCGACGAC TACATCGCGC GGCCCAAGCC CAACGGCTAC CAGTCGCTGC ACACAGTGGT GCGCGAGATG GTCGACGGCA AGCCCGGCAA GCCGATCGAG ATCCAGATCC GCACCGAAGA AATGCACGAC CATGCCGAGC ACGGCGTGGC GGCGCACTGG GCCTACAAGG AGGCCGGGCA CAAGGGCTAT GCGGGCGTGT GGGCGAGCGG CGAATACGAC GCGAAGATCG CCGTGCTGCG GCAACTGCTG GCATGGGAGC GCGACCTTTC GGGCGGCTCG CAGGGCCAGG GGCTTTTCGA CGACCGCATC TACGTGCTCA CGCCCGACGC GGCCATCGTC GAACTGCCGC AGGGCGCAAC GCCGGTCGAC TTTGCCTACA CCGTGCACAC CACGCTGGGC CACCGCTGCC GCGGAGCGCG CGTCGATGGG GCCATGGTGC CGCTCAACAC GCCGCTGTCG AACGGCCAGA CGGTGGAGAT CATCGCGGCC AAGGAGGGCG GGCCTTCGCG CGACTGGCTC AATGCCGAGC TCGGCTACCT TGCAAGCCAC CGCGCGCGCG CCAAGGTGCG CGCATGGTTC AACGCGCAGA TCACGCACGA AACCGTGGCG CGCGGGCGCG AGGCGGTCGA GAAGCTGCTG CAGCGCGAAG GCAAGACCTC CACGCGCCTC GAGGACCTGG CTTCTCAGCT GGGCTTCAAG TCGGCGGACC ACTTGTTCGA AGTGGTCGGC AAGGACGAGT TCTCGCTGCG CAACATCGAG GTGCTGCTGC GTCCGCCCGA GCCCGCGCCC AACCCCGACG ACGGCGTGCA GATCAAGAAG CCGCGCGCGA GCGAGAAGTC CGGCAAGGGC GGTGTGCTGG TGGTGGGCGT GTCTTCGCTG ATGACGCAGC TCGCCAAGTG CTGCAAGCCC GCGCCGCCCG ATGCCATCCG CGGCTTCGTG ACGCGCGGCC ACGGCGTGAG CGTGCACCGC GTCGACTGCA GCAACTTCCG CATGATGGCC TCGCGCGACA GCGAGCGCGT GATCGATGTC GAATGGGGCG CCGCGAAGGG CGGCGAAGCG CCGGTCTATG CAGTCGACGT GTCCGTCGAG GCGGCCGACC GCCAGGGCCT GCTGCGCGAC ATCTCCGATG TGTTCGCACG CGAGAAGATG AACGTGATCG GCGTGCAGAC CCAATCGGTC AAGGGCACGG CATGGATGAC CTTCACCGTG GAAATCTCCG ATGCGGCGCG GCTCACGCAG GTGCTGGGCG TGGTGACGGC GGTTGCCGGT GTGCGATCTG CACGTCGGCG CTGA
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Protein sequence | MKRESSSLQT AHASDTAVVD YPLSAATADR TPVMENMLAR ARAFAEPLIA DEKLDTGENT LAHADAVAAI VAKMGGSEAM QAASYLVYAC QHLNRPQEVI AKVFGDNFAA LAVETTKLVR VQEQARSASQ GHHLAEGAAG AQTENVRKML LAFSRDLRVV MLRLASRLQT LRHAAASKQP APESVARESL QVFAPLANRL GIWQVKWEIE DLSFRFLEPE TYKLIARLLD EKRVEREGHV EQLRSQLERE LQAEGVRATV QGRPKNIYSI VKKMRGKSLD FAQVFDILAL RVVVPDVKDC YAALAWVHSH FLPIDEEFDD YIARPKPNGY QSLHTVVREM VDGKPGKPIE IQIRTEEMHD HAEHGVAAHW AYKEAGHKGY AGVWASGEYD AKIAVLRQLL AWERDLSGGS QGQGLFDDRI YVLTPDAAIV ELPQGATPVD FAYTVHTTLG HRCRGARVDG AMVPLNTPLS NGQTVEIIAA KEGGPSRDWL NAELGYLASH RARAKVRAWF NAQITHETVA RGREAVEKLL QREGKTSTRL EDLASQLGFK SADHLFEVVG KDEFSLRNIE VLLRPPEPAP NPDDGVQIKK PRASEKSGKG GVLVVGVSSL MTQLAKCCKP APPDAIRGFV TRGHGVSVHR VDCSNFRMMA SRDSERVIDV EWGAAKGGEA PVYAVDVSVE AADRQGLLRD ISDVFAREKM NVIGVQTQSV KGTAWMTFTV EISDAARLTQ VLGVVTAVAG VRSARRR
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