| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2578 |
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| Symbol | |
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| ID | 7970055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2718812 |
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| End bp | 2722309 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793165 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002944470 |
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| Protein GI | 239815560 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTCC CCCACCTCAC GGCGGGCAAG CGATTCACGC TGCCGCGTCC TCCTTTGTCG
GCCGATGCGC TGCTGCTGGC GCAGCTGGGC ATGCGCGAGA AGGCCGCGGG CCGCGCCACC
GCGATGTTCA CGGCCGACGC CAACGACGCG CAGCGGCTGA TCGACGAGAT CGCCTTCTTC
GCGCCCGAGC TGCGCTGCGC CCTGTTCCCC GACTGGGAAA CGCTGCCCTA CGACAGCTTT
TCCCCGCACC AGGACCTGAT CAGCGAGCGC CTGGCCACGC TCTGGCGCAT CAGCCAGAAA
GAGGCCGACG TGGTGCTGGT GCCCGCCACC ACCGCGCTCT ACCGGCTCGC GCCGCCGGCC
TTCCTGGCCG GCTACACCTT CCACTTCAAG GCCAAGCAGA AGCTCGAGGA ATCCAAGCTC
AAGGCCCAGC TCACGCTGGC CGGCTACAGC CACGTGACAC AGGTGGTGAG CCCGGGCGAA
TACGCGGTGC GCGGCGGCCT GATCGACCTC TTTCCGATGG GCTCGCTGGT GCCGTTTCGC
GTCGACCTGT TCGACGACGA GATCGACTCG ATCCGCACCT TCGACCCCGA CACCCAGCGC
AGCCTCTATC CGGTGCCCGA GGTGCGGCTG CTGCCCGGCC GCGAGTTCCC GATGGACGAC
GACGCCCGCG CGCGCTTCCG CAGCCGCTGG CGCGAACTGC TCGAAGGCGA CCCGACCAAG
AGCCGCATCT ACAAGGACAT GGGCAACGGC GTGGCCACCG CCGGCATCGA GTACTACCTG
CCGCTGTTCT TCGACGAGAC GGCCACGGTG TTCGACTACC TGGGTGCGGA CGCCACCGTG
GTGCTGCACG GCGACCTGGA GCCCGCGTTC CAGCATTTCT GGCAGGACAC GAGCGAGCGC
TACCGCCTGG TGCGCGGCGA CCCCGAACGC CCGGCGCTGC CGCCCGAGGC GCTGTTCCTG
AGTGCCGAGC AGTTCTACCA GCGCGCCAAG CCGCATGCGC AGCTCGCGAT CCGCGGAAAC
GCGGGCGGCG GAGACATTGC TGCCGAGACG CCCTACGCCG AGTTCGACAG GCTGCCGCCC
TTTGCCGTGG TGCGCGGCGC GGAGGACCCG CTGGTCGGCC TCAAGGCCCA TATCAAGGCC
ACGCCGCACC GCGTGCTGCT GATCGCCGAA AGCGAAGGCC GGCGCGAAAG CCTGCTCGAC
TTCCTGCGCG CCAGCGGCGT GAGCCCGCCG GCCTTCGATT CGCTGGCCGA GTTCGAAGCC
TCGGCCGACG AGAAGATCGG CATCGCCACC GCCGCGCTCG CCTCGGGCTT TGCCTGGCGC
GAGCAGGGCA TCGACTTCGT CACCGAGACC GAGCTCTTCG CCACCGCGCC CACCACGCGC
CGGCGCAACA AGAAGCAGGA ACAGGTCAGC GACGTCGAGG CGCTGATCAA GGACCTGTCC
GAGCTCAACG TGGGCGACCC GGTGGTCCAC ACCGCGCACG GCATCGGACG CTACCGCGGC
CTGATCCACA TGGACCTGGG CCAGGGCACC GATGCCGAAG GCAAGCCGCT CTTGCAGGAA
ATGCTGCACC TGGAGTACGC CGACAAGGCG ACGCTCTACG TGCCGGTCTC GCAGCTGCAC
CAGATCAGCC GCTACACCGG CGTCAGCGCC GACGAGGCGC CGCTGCACAA GCTGGGCTCC
GGCCAGTGGG AAAAGGCCAA GCGCAAGGCC GCCGAGCAGG TGCGCGACTC GGCCGCCGAG
CTGCTCAACA TCTACGCCCG CCGCGCCGCG CGGCAGGGCC ATGCCTTCCG CTACTCGGCC
GCCGACTACG AAGTGTTCGC CAACGACTTC GGCTTCCAGG AAACCGCCGA CCAGAAGGCC
GCGATCCACG CCGTGGTGCA GGACATGATC TCGCCCCAGC CGATGGACCG CCTGGTCTGC
GGCGACGTGG GCTTCGGCAA GACCGAGGTG GCGCTGCGCG CCGCCTTCAT CGCGATCACC
GGCGGCAAGC AGGTGGCCTT CCTCGCGCCT ACCACGCTCC TGGCCGAGCA GCACTACCAG
ACGCTGGTCG ACCGCTTCGC CAAGTGGCCG GTCAAGGTGG CCGAGATGAG CCGCTTCCGC
TCGGCCAAGG AGATCACCGC GGCGGCCAAG GGCCTGGCCG AAGGCACGGT CGACATCGTG
GTCGGCACGC ACAAGCTGCT CTCGCAGTCG GTCAAGTTCA AGAACCTGGG CCTGCTCATC
ATCGACGAGG AGCACCGCTT CGGCGTGCGC CACAAGGAGG CGATGAAGGC CATGCGCGCC
GAGGTCGACG TGCTCACGCT CACCGCCACG CCGATTCCGC GCACGCTGGG CATGGCGCTC
GAGGGCTTGC GCGACCTGAG CGTGATCGCG ACCGCGCCGC AGCGGCGCCT CGCCATCAAG
ACCTTCGTGC GCAACGAGGG CACGGGCGTG ATCCGCGAAG CCGTGCTGCG CGAACTGAAG
CGCGGCGGGC AGGTGTACTT CCTGCACAAC GAGGTCGAGA CCATCGAGAA CCGGCGCCAA
AAGCTCGAGG AGATATTGCC CGAGGCCCGC ATCGCCGTGG CCCACGGCCA GATGCCCGAG
CGCGAGCTCG AGCGCGTGAT GCGCGACTTC GTGGCGCAGC GCTACAACCT CCTGCTGTGC
TCGACCATCA TCGAGACCGG CATCGACGTG CCGACCGCCA ACACCATCGT GATGAGCCGC
GCCGACAAGT TCGGCCTCGC GCAGCTGCAC CAGCTGCGCG GCCGTGTCGG GCGCTCGCAC
CACCAGGCCT ATGCCTACCT GATGGTGCCG GACACCGAGG GCCTGACCAA GCAGGCGGCG
CAGCGGCTCG ACGCCATCCA GCAGATGGAA GAACTGGGTT CGGGCTTCTA TCTTGCGATG
CACGACCTGG AGATCCGCGG CACGGGCGAA GTGCTGGGCG AGAACCAGAG CGGCAACATG
ATGGAGATCG GCTTCCAGCT CTACAACGAG ATGCTGAGCG AGGCGGTGCG CGCGCTCAAG
GCCGGGCAGG AGCCCGACCT GCTCGCGCCG CTGTCGGTCA CCACCGAGAT CAATTTGCAC
GCCCCCGCCC TCTTGCCCGA CGACTACTGC GGCGACGTGC ACCTGCGCCT GTCGTTCTAC
AAGAAGCTGG CCACCGCGAA GACGCCCGAG CAGATCGACA CCTTGCTCGA AGAAATCGTC
GACCGCTTCG GCAAGCTGCC GCCGCAGGCG CAGACGCTGA TCGACACGCA CCGGCTGCGC
GTGCTCGCAC GGCCGTACGG CGTGGTGAAG GTGGATGCGG CGCCGGGCGT GATCCACATC
ACGTTCAAGA AGGATCCGCC GGTCGACTCG ATGGCCATCA TCCACCTGAT CCAGAAGAAC
AAGCACATCA AGCTCGCGGG CAACGAGAAG CTGCGCATCG AGCGCGAGCT GAAGGAGCCC
AAGGAGCGTG CGCAAATGGT GCGCGACGTG CTGCGCAGCC TCGGACAACC GATCGTCAAG
GAACCCGCCC CCGCATGA
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| Protein sequence | MDLPHLTAGK RFTLPRPPLS ADALLLAQLG MREKAAGRAT AMFTADANDA QRLIDEIAFF
APELRCALFP DWETLPYDSF SPHQDLISER LATLWRISQK EADVVLVPAT TALYRLAPPA
FLAGYTFHFK AKQKLEESKL KAQLTLAGYS HVTQVVSPGE YAVRGGLIDL FPMGSLVPFR
VDLFDDEIDS IRTFDPDTQR SLYPVPEVRL LPGREFPMDD DARARFRSRW RELLEGDPTK
SRIYKDMGNG VATAGIEYYL PLFFDETATV FDYLGADATV VLHGDLEPAF QHFWQDTSER
YRLVRGDPER PALPPEALFL SAEQFYQRAK PHAQLAIRGN AGGGDIAAET PYAEFDRLPP
FAVVRGAEDP LVGLKAHIKA TPHRVLLIAE SEGRRESLLD FLRASGVSPP AFDSLAEFEA
SADEKIGIAT AALASGFAWR EQGIDFVTET ELFATAPTTR RRNKKQEQVS DVEALIKDLS
ELNVGDPVVH TAHGIGRYRG LIHMDLGQGT DAEGKPLLQE MLHLEYADKA TLYVPVSQLH
QISRYTGVSA DEAPLHKLGS GQWEKAKRKA AEQVRDSAAE LLNIYARRAA RQGHAFRYSA
ADYEVFANDF GFQETADQKA AIHAVVQDMI SPQPMDRLVC GDVGFGKTEV ALRAAFIAIT
GGKQVAFLAP TTLLAEQHYQ TLVDRFAKWP VKVAEMSRFR SAKEITAAAK GLAEGTVDIV
VGTHKLLSQS VKFKNLGLLI IDEEHRFGVR HKEAMKAMRA EVDVLTLTAT PIPRTLGMAL
EGLRDLSVIA TAPQRRLAIK TFVRNEGTGV IREAVLRELK RGGQVYFLHN EVETIENRRQ
KLEEILPEAR IAVAHGQMPE RELERVMRDF VAQRYNLLLC STIIETGIDV PTANTIVMSR
ADKFGLAQLH QLRGRVGRSH HQAYAYLMVP DTEGLTKQAA QRLDAIQQME ELGSGFYLAM
HDLEIRGTGE VLGENQSGNM MEIGFQLYNE MLSEAVRALK AGQEPDLLAP LSVTTEINLH
APALLPDDYC GDVHLRLSFY KKLATAKTPE QIDTLLEEIV DRFGKLPPQA QTLIDTHRLR
VLARPYGVVK VDAAPGVIHI TFKKDPPVDS MAIIHLIQKN KHIKLAGNEK LRIERELKEP
KERAQMVRDV LRSLGQPIVK EPAPA
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