Gene Vapar_2571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2571 
Symbol 
ID7970048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2714172 
End bp2714819 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content66% 
IMG OID644793158 
Productendonuclease III 
Protein accessionYP_002944463 
Protein GI239815553 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.563306 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAG ACAACATCCC CCTCTTCTTC GCCACCCTGC AGGCGGCCAA CCCCACCCCC 
GAAACCGAGC TCGAATACGC CACGCCATTC GAACTGCTGG CCGCCGTGCT GCTCTCGGCG 
CAGGCGACCG ACGTGGGCGT GAACAAGGCC ACGCGCAAGC TGTTTCCGGT GGCGAACACG 
CCGCAGGCGA TCCTCAGGCT GGGCGTGGAG GGCCTGGAGG ACTACATCAA GACCATCGGG 
CTGTACCGCA GCAAGGCCAA GCACCTGATC GAGACCTGCC GCATCCTGGT GGAAAAGCAC 
GGCGGCGAAG TGCCCCGTAC GCGCGCCGAG CTCGAGGCGC TGCCGGGCGT CGGCCGCAAG 
ACCGCCAACG TGGTGCTCAA CGTGGCGTTC GGCGAAGCGA CGATCGCGGT CGACACGCAC 
ATCTTCCGCG TCAGCAACCG CACCGGGCTC GCGCCGGGCA AGACGCCGCT CGAAGTGGAG 
CTCAAGCTGG AGAAACGCGT GCCGTTCGAA TTCCGGCTGC ATGCGCACCA CTGGCTCATC 
CTGCATGGGC GCTACATCTG CGTGGCACGC ACGCCGAAGT GCTGGGAATG CGCGGTGGCA 
CCCTTTTGCG ACTACAAGCC GAAGACGCCG CGGCCCAAGT CGGCCTGA
 
Protein sequence
MKKDNIPLFF ATLQAANPTP ETELEYATPF ELLAAVLLSA QATDVGVNKA TRKLFPVANT 
PQAILRLGVE GLEDYIKTIG LYRSKAKHLI ETCRILVEKH GGEVPRTRAE LEALPGVGRK 
TANVVLNVAF GEATIAVDTH IFRVSNRTGL APGKTPLEVE LKLEKRVPFE FRLHAHHWLI 
LHGRYICVAR TPKCWECAVA PFCDYKPKTP RPKSA