| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2566 |
|---|
| Symbol | |
|---|
| ID | 7970043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2709872 |
|---|
| End bp | 2710921 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644793153 |
|---|
| Product | nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase |
|---|
| Protein accession | YP_002944458 |
|---|
| Protein GI | 239815548 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.32554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA GCAACCAGAC CATTCCTTCC ATCTCCGACA TTCATGACGG CGCTCTTGCG
GCGCGCCTGC AAAGCGCGCT CGACAACAAG ACCAAGCCGC TCGGCGCGCT CGGCCGGCTC
GAGAGCCTGG CCTTGCGGAT CGGCCTCGTC CTGGGCAGTG AAACGCCGGT GCTCGAAGCA
CCGCAGATGC TGGTGTGCGC GGCCGACCAT GGCCTGGCGG CGCGCGGCGT CTCGGCCTTT
CCGAGCGACG TGACCTGGCA AATGGTCGAG AACTTCCTGG CCGGCGGCGC GGCCGTCAGC
GTGCTGGCGC TCCAGCACGG CCTCGCGCTC ACCGTGGTCG ACTGCGGCGT GCGGCGCGAC
TTCCAGGCCC GCCCCGGGCT GGTCTCGCGC CGGATCGCCG CCGGTACCGC CGATGCGTCG
GCCGGGCCCG CCATGACCGC GGAGCAATGC GCGCAAGCCA TCGCCAACGG GCGCGAGGTG
GTGCGCGCGC TGCCGGGCAA TGCCTTGCTG CTCGGCGAAA TGGGCATCGG CAACAGCTCG
GCCGCAGCGC TGCTGCTGGC GCGCCTCGCG GGGCTGGACA TCGATGGCTG CACCGGCTCC
GGCACCGGCC TCGACGCCGC GGGGCTCGCG CGCAAGCGGG AGGTGCTGCG CGACGTGCTG
GCGCTGCATG CGGCTGCGAG CGAGCCGCTC GATGCACTCG CGGCGTTCGG CGGCTTCGAG
ATTGCCACGC TGGTCGGCGC GGTGCTGCAG GCGGCGCAGG AGCGGCGCGT GATCGTGATC
GATGGCTTCA TCGCGAGCGC CGCGGTGCTG GTGGCGCAGG CGCTGCAGCC GCATGTGGCG
CAGCGCTGCG TGGCCGCGCA CAGCTCGGCG GAACCCGGGC ATGCGCTGCT GCTGAAGCAC
CTCGGCCTGG AGCCCTTGCT GAACCTGGAC CTGCGCCTTG GCGAAGGCTC GGGCGGTGCG
CTGGCCTGGC CGCTGCTCGA ATCGGCTTGC CGCATCCTGC GCGAGATGGC CAGCTTCGAA
GCCGCCGGCG TGTCGCGCAA GGACAGTTGA
|
|---|
| Protein sequence | MTDSNQTIPS ISDIHDGALA ARLQSALDNK TKPLGALGRL ESLALRIGLV LGSETPVLEA
PQMLVCAADH GLAARGVSAF PSDVTWQMVE NFLAGGAAVS VLALQHGLAL TVVDCGVRRD
FQARPGLVSR RIAAGTADAS AGPAMTAEQC AQAIANGREV VRALPGNALL LGEMGIGNSS
AAALLLARLA GLDIDGCTGS GTGLDAAGLA RKREVLRDVL ALHAAASEPL DALAAFGGFE
IATLVGAVLQ AAQERRVIVI DGFIASAAVL VAQALQPHVA QRCVAAHSSA EPGHALLLKH
LGLEPLLNLD LRLGEGSGGA LAWPLLESAC RILREMASFE AAGVSRKDS
|
|---|
| |