Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2560 |
Symbol | |
ID | 7970037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2700129 |
End bp | 2701043 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793147 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002944452 |
Protein GI | 239815542 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.118056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAAA TCCAGGCAAT GCGGATCTTT GTCCGCGTGG TGGAAGCGGG CACGTTCACC CGGGCGGCGG ACTCGCTCGC CCTGCCCAAG GGGACGGTCA CCAAGCAGAT CCAGGCGCTG GAATCGCGCC TGCGGGTGAA GCTGCTCAAC CGCACCACGC GGCGAGTGAC CGTGACGCCG GACGGCGCGG CCTACTACGA ACGCGCCGCG CGCCTCTTGA ACGACTTCGA CGACATCGAA GCCAGCATGA CCAATGCGCA GGCCAACCCG ACGGGGCGGC TGCGCATCGA CGTCGGCACC TCGGTGGCGC GGCAGATCAT CCTGCCCGCG CTGGCCACCT TCTGCGACCG CTACCCCGAG ATCCAGGTCG ACCTGGGCGT GAGCGACCGC ACGGTCGACC TCATCAGCGA CAACGTCGAC TGCGTGATCC GCGCCGGCGA ACTGAGCGAC CAGTCGCTGG TGGCCCGGCG CATCGGCACG CTGCACTTCG TGACCGTGGC ATCGCCCGCC TACGTCAAGC GCTACGGCAT TCCGCAGCAT CCGAACGACA TCGAGAAGCG CCACCACGTG GTGAGCTATT TTTCGGGCAC CACGCGGCGC ATCTATCCGC ACGAGTTCAG GAAGGGCGAC GAATACATCG AGCTCAACGG GCCCTACCGC GTGTCGGTCA ACGAGAGCAA CGCCCACATG GCGGCGGTGC TCGGCGGCTT CGGTATTTCG CAGTGCATCA CCTTCATGGC CGAGCCGCTG CTCGCAAGCG GCGAGCTGAT CGAGGTGCTG CCCGACTGGC AGCGCGAGCC GCTTCCGATC CACGTGGTCT ATCCGCCCAA CCGCCACCTG AGCGCGAAGG TGCGGGCCTT CGTGGACTGG GCGGCGGAGC TGTTCGCGAA GAACCCGCGG CTGCAGCGGC GCTGA
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Protein sequence | MDQIQAMRIF VRVVEAGTFT RAADSLALPK GTVTKQIQAL ESRLRVKLLN RTTRRVTVTP DGAAYYERAA RLLNDFDDIE ASMTNAQANP TGRLRIDVGT SVARQIILPA LATFCDRYPE IQVDLGVSDR TVDLISDNVD CVIRAGELSD QSLVARRIGT LHFVTVASPA YVKRYGIPQH PNDIEKRHHV VSYFSGTTRR IYPHEFRKGD EYIELNGPYR VSVNESNAHM AAVLGGFGIS QCITFMAEPL LASGELIEVL PDWQREPLPI HVVYPPNRHL SAKVRAFVDW AAELFAKNPR LQRR
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