Gene Vapar_2560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2560 
Symbol 
ID7970037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2700129 
End bp2701043 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content67% 
IMG OID644793147 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002944452 
Protein GI239815542 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.118056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCAAA TCCAGGCAAT GCGGATCTTT GTCCGCGTGG TGGAAGCGGG CACGTTCACC 
CGGGCGGCGG ACTCGCTCGC CCTGCCCAAG GGGACGGTCA CCAAGCAGAT CCAGGCGCTG
GAATCGCGCC TGCGGGTGAA GCTGCTCAAC CGCACCACGC GGCGAGTGAC CGTGACGCCG
GACGGCGCGG CCTACTACGA ACGCGCCGCG CGCCTCTTGA ACGACTTCGA CGACATCGAA
GCCAGCATGA CCAATGCGCA GGCCAACCCG ACGGGGCGGC TGCGCATCGA CGTCGGCACC
TCGGTGGCGC GGCAGATCAT CCTGCCCGCG CTGGCCACCT TCTGCGACCG CTACCCCGAG
ATCCAGGTCG ACCTGGGCGT GAGCGACCGC ACGGTCGACC TCATCAGCGA CAACGTCGAC
TGCGTGATCC GCGCCGGCGA ACTGAGCGAC CAGTCGCTGG TGGCCCGGCG CATCGGCACG
CTGCACTTCG TGACCGTGGC ATCGCCCGCC TACGTCAAGC GCTACGGCAT TCCGCAGCAT
CCGAACGACA TCGAGAAGCG CCACCACGTG GTGAGCTATT TTTCGGGCAC CACGCGGCGC
ATCTATCCGC ACGAGTTCAG GAAGGGCGAC GAATACATCG AGCTCAACGG GCCCTACCGC
GTGTCGGTCA ACGAGAGCAA CGCCCACATG GCGGCGGTGC TCGGCGGCTT CGGTATTTCG
CAGTGCATCA CCTTCATGGC CGAGCCGCTG CTCGCAAGCG GCGAGCTGAT CGAGGTGCTG
CCCGACTGGC AGCGCGAGCC GCTTCCGATC CACGTGGTCT ATCCGCCCAA CCGCCACCTG
AGCGCGAAGG TGCGGGCCTT CGTGGACTGG GCGGCGGAGC TGTTCGCGAA GAACCCGCGG
CTGCAGCGGC GCTGA
 
Protein sequence
MDQIQAMRIF VRVVEAGTFT RAADSLALPK GTVTKQIQAL ESRLRVKLLN RTTRRVTVTP 
DGAAYYERAA RLLNDFDDIE ASMTNAQANP TGRLRIDVGT SVARQIILPA LATFCDRYPE
IQVDLGVSDR TVDLISDNVD CVIRAGELSD QSLVARRIGT LHFVTVASPA YVKRYGIPQH
PNDIEKRHHV VSYFSGTTRR IYPHEFRKGD EYIELNGPYR VSVNESNAHM AAVLGGFGIS
QCITFMAEPL LASGELIEVL PDWQREPLPI HVVYPPNRHL SAKVRAFVDW AAELFAKNPR
LQRR