| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2558 |
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| Symbol | |
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| ID | 7970035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2698862 |
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| End bp | 2699593 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793145 |
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| Product | LrgB family protein |
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| Protein accession | YP_002944450 |
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| Protein GI | 239815540 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1346] Putative effector of murein hydrolase |
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| TIGRFAM ID | [TIGR00659] conserved hypothetical protein TIGR00659 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.171852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCGC CCGCCAAGCT GTCCGAGATC TGGGTCTTCC TGGCGCAGTC GCCGCTGCTG
TGGCTGTCGC TCACGCTGCT GGCCTACCTG GGCGCGCTGT GGCTGCACCG GCGCAGCGGC
GCCAACCCGG CGGTCAATCC GGTGCTGGTG TCGGTGGTTG TCATCGTGGG CGTGCTGCTC
GCCACGCGCA CGCCCTACGA CACATATTTC GAAGGCGCCA AGTTCGTGCA CTTCCTGATC
GGGCCGGCCA CCGTGGCACT GGCCGTGCCG CTGTATGGCC AGCTCGGTCG GCTGCGGCGC
CTCTGGCTGC CGATCGGCGT GGCGCTGCTG GTGGGCTCGG CGGCGGCCAT CGTGTCGGCC
ATCGGCATTG CCTGGGCGCT GGGCGGATCG CACGAGCTGC TGATGTCGCT CGCGCCCAAG
TCGGCCACCA TGCCGATCGC GATGGGCGTG GCCGAGAAGA TCGGCGGGCT GCCGTCGCTG
GCCGCGGTGG CGGCCGCCGT GGCGGGCATC TCGGGCGCGA TCATGGCCAC GGGTCTCCTG
AACCTGCTGC GCATCAAGGA GCCCGCGGTG CGCGGCTTTG CCGTGGGCAT GGCGGCGCAC
GGCATCGGCA CCGCGCGGGC CATCCAGGTG AACGAAACGG CAGGCGCCTT CTCCGCGCTG
GCGCTGGGGC TGAATGGCAT CGCGACGGCG CTGCTGGTGC CGCTTTTGAT CAGGCTCGCC
GGCTTCTTCT GA
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| Protein sequence | MTPPAKLSEI WVFLAQSPLL WLSLTLLAYL GALWLHRRSG ANPAVNPVLV SVVVIVGVLL
ATRTPYDTYF EGAKFVHFLI GPATVALAVP LYGQLGRLRR LWLPIGVALL VGSAAAIVSA
IGIAWALGGS HELLMSLAPK SATMPIAMGV AEKIGGLPSL AAVAAAVAGI SGAIMATGLL
NLLRIKEPAV RGFAVGMAAH GIGTARAIQV NETAGAFSAL ALGLNGIATA LLVPLLIRLA
GFF
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