| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2552 |
|---|
| Symbol | |
|---|
| ID | 7970029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2694429 |
|---|
| End bp | 2695211 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644793139 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002944444 |
|---|
| Protein GI | 239815534 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1120] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.669044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG AGATCCCCGC ACTCGAAGCC CGCGGCCTGG GCGCCACGCT CGGCAACACC
GAGGTGCTGC ACGGCATCGA CCTGAAGCTC GGCGCGGCGC GCTGGACCAG CGTGGTCGGG
CCGAACGGGG CGGGCAAGTC GACCCTGCTC AAGGCGCTCG CGGGCCTGCT CGCGCACCGC
GGCGAAGTCT TTCTTTTTGG CGAACCGTCG GCCAGGGTGC CGGGCCGCCT TCGCGCGCAG
CGCCTGTCGT GGCTGGGCCA GAGCGGCGCG GCGGGCGAGG GCAGTGCCGA CGACCTGATG
GTCTACGACA TCGCCATGCT CGGCCGCCTG CCGCACCAGC GCTGGCTCGC GGCGCCGAGC
CCGGCCGACC GCGCGGCGGT GGAGCGTGCC TTGCGCAGCA CCCAAGCGTG GGACTGGCGC
GAACGGCCGC TCGGACAGCT CTCGGGCGGC GAGCGCCAGC GCGTGCTGCT GGCGCGCGCG
CTTGCGGTCG AGGCCGAGCT GCTGCTGATG GACGAGCCGC TCGCCAACCT CGACCCGCCG
CACCAGGCCG ACTGGATGCA GACCACGCGC GCCCTGGTGG CCGAAGGCCG CACCGTGGTC
AGCGTGCTGC ACGAACTGCC GATGGCGCTG GCCGCCGACG AGCTGGTGGT AATGAACCAC
GGCCGCGTGG TGCACCGCGG CGGCAGCAGC GACCCGGCCA CCCACGCCGC GCTCGAACAG
GTGTTCGACC ACCGCATCCG CGTGCACCGC GTGGCCGAGC AGTGGATCGC GCTGCCGAAC
TGA
|
|---|
| Protein sequence | MSQEIPALEA RGLGATLGNT EVLHGIDLKL GAARWTSVVG PNGAGKSTLL KALAGLLAHR
GEVFLFGEPS ARVPGRLRAQ RLSWLGQSGA AGEGSADDLM VYDIAMLGRL PHQRWLAAPS
PADRAAVERA LRSTQAWDWR ERPLGQLSGG ERQRVLLARA LAVEAELLLM DEPLANLDPP
HQADWMQTTR ALVAEGRTVV SVLHELPMAL AADELVVMNH GRVVHRGGSS DPATHAALEQ
VFDHRIRVHR VAEQWIALPN
|
|---|
| |