Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2533 |
Symbol | |
ID | 7970010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2674321 |
End bp | 2675094 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644793120 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_002944425 |
Protein GI | 239815515 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCAC GCACTCTCCA GAACAAGGTC GCCGTCATCG CCGGCGGCGG CAAGAACCTC GGCGCGCTCA TCGGCCATCA ACTGGTCGAT GGCGGCGCCC GCGGCATCGC CATCCACTAC AACAGCGATG CCTCGCGCAA GGAGGCCGAG AAGACCGCCG CCGAGCTCGA GGCCAAGGGC GCCGGCACGC TGCTGGTGCA GGGCGACCTT GCCGTGGTGG AGAACAACGT CCGGCTGTTC GACCAGGCCG TCAAGCACTT CGGGCAGGTC GACATCGCCA TCAACACCGC GGGCGTGGTG ATCAAGAAGC CGATCCTCGA TGTCACCGAA GCCGACTACG ACAAGAGCTT CGACGCCAAC GCCAAGGCCG CGTTCTTCTT CATCCAGCAG GCCGGCCGCA CGCTGGCCGA CGGCGGCAGC ATCGTGTCGC TGGTGAGCTC GCTGCTGGCG GCCTACACGC CGTTCTACGC GATCTATCCG GCCTCGAAGG CGGCGGTGGA GCACTACACG CGCGCGGCTT CCAAGGAGTT CGGCGAGCGC GGCATCTCGG TCAACGCGAT CGGCCCCGGA CCGATGGACA CGCCGTTCTT CTACGGCCAG GAAAGCAAGG AAGCCGTCGA GTACCACAGC AGTGCGGCGG CGCTCAGCAA GTTCTCGAAG AAGGGCCTCA CCGACATCGA GGACATCGCG CCCATCGTCC GCTTCCTGGT CACCGAAGGC TGGTGGATCA CCGGCCAGAC CATCTTTGCC AACGGTGGCT ACACCACGCG CTGA
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Protein sequence | MSARTLQNKV AVIAGGGKNL GALIGHQLVD GGARGIAIHY NSDASRKEAE KTAAELEAKG AGTLLVQGDL AVVENNVRLF DQAVKHFGQV DIAINTAGVV IKKPILDVTE ADYDKSFDAN AKAAFFFIQQ AGRTLADGGS IVSLVSSLLA AYTPFYAIYP ASKAAVEHYT RAASKEFGER GISVNAIGPG PMDTPFFYGQ ESKEAVEYHS SAAALSKFSK KGLTDIEDIA PIVRFLVTEG WWITGQTIFA NGGYTTR
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