Gene Vapar_2533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2533 
Symbol 
ID7970010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2674321 
End bp2675094 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content66% 
IMG OID644793120 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002944425 
Protein GI239815515 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGCAC GCACTCTCCA GAACAAGGTC GCCGTCATCG CCGGCGGCGG CAAGAACCTC 
GGCGCGCTCA TCGGCCATCA ACTGGTCGAT GGCGGCGCCC GCGGCATCGC CATCCACTAC
AACAGCGATG CCTCGCGCAA GGAGGCCGAG AAGACCGCCG CCGAGCTCGA GGCCAAGGGC
GCCGGCACGC TGCTGGTGCA GGGCGACCTT GCCGTGGTGG AGAACAACGT CCGGCTGTTC
GACCAGGCCG TCAAGCACTT CGGGCAGGTC GACATCGCCA TCAACACCGC GGGCGTGGTG
ATCAAGAAGC CGATCCTCGA TGTCACCGAA GCCGACTACG ACAAGAGCTT CGACGCCAAC
GCCAAGGCCG CGTTCTTCTT CATCCAGCAG GCCGGCCGCA CGCTGGCCGA CGGCGGCAGC
ATCGTGTCGC TGGTGAGCTC GCTGCTGGCG GCCTACACGC CGTTCTACGC GATCTATCCG
GCCTCGAAGG CGGCGGTGGA GCACTACACG CGCGCGGCTT CCAAGGAGTT CGGCGAGCGC
GGCATCTCGG TCAACGCGAT CGGCCCCGGA CCGATGGACA CGCCGTTCTT CTACGGCCAG
GAAAGCAAGG AAGCCGTCGA GTACCACAGC AGTGCGGCGG CGCTCAGCAA GTTCTCGAAG
AAGGGCCTCA CCGACATCGA GGACATCGCG CCCATCGTCC GCTTCCTGGT CACCGAAGGC
TGGTGGATCA CCGGCCAGAC CATCTTTGCC AACGGTGGCT ACACCACGCG CTGA
 
Protein sequence
MSARTLQNKV AVIAGGGKNL GALIGHQLVD GGARGIAIHY NSDASRKEAE KTAAELEAKG 
AGTLLVQGDL AVVENNVRLF DQAVKHFGQV DIAINTAGVV IKKPILDVTE ADYDKSFDAN
AKAAFFFIQQ AGRTLADGGS IVSLVSSLLA AYTPFYAIYP ASKAAVEHYT RAASKEFGER
GISVNAIGPG PMDTPFFYGQ ESKEAVEYHS SAAALSKFSK KGLTDIEDIA PIVRFLVTEG
WWITGQTIFA NGGYTTR