Gene Vapar_2525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2525 
Symbol 
ID7970002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2666373 
End bp2667011 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content65% 
IMG OID644793112 
Producthypothetical protein 
Protein accessionYP_002944417 
Protein GI239815507 
COG category[S] Function unknown 
COG ID[COG2862] Predicted membrane protein 
TIGRFAM ID[TIGR00645] conserved hypothetical transmembrane protein 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGCAC CCGAATCCTT CGACCGCCCG AATACGCCTG TTCCAGCCCG CGGCTCGCCG 
CTGCGGCCGC TGCCCAAGCT GATTTTCGCG AGCCGCTGGC TGCAGCTGCC GCTCTACCTG
GGGCTGATCG TGGCGCAGGC GGTGTACGTG GTGCACTTCC TGGTCGAGCT GCTGCACCTG
GTGGAGGCGG CCTTCGGCAG CAAGGACGCG CTGCAGGCGC TGATCACCAG CATCGGCTAC
AAGACCACCG CGCCGGTGGG CACGCTCAAC GAAACAGTGA TCATGCTGGT GGTGCTGGCG
CTGATCGACG TGGTGATGAT CTCCAACCTG CTGATCATGG TGATCGTGGG CGGCTACGAA
ACCTTCGTGA GCCGCATGGA CCTCGAAGGC CACCGCGACC AGCCCGAGTG GCTGAGCCAT
GTGAACGCCT CGGTGCTCAA GGTCAAGCTG GCCACCGCCA TCATCGGCAT CAGCTCGATC
CACCTGCTGA AGACCTTCAT CAACGCGGAC AACTACACCG ACCGCGTGCT GATTGCGCAG
ACCGTGATCC ACATCGCCTT CCTGTTCTCG GCCATGGCCA TCGCCTACAC CGACAGGCTC
ATGGCGCCCG CCGTGCCGCA GGGCGGCGGT TCGCACTGA
 
Protein sequence
MSAPESFDRP NTPVPARGSP LRPLPKLIFA SRWLQLPLYL GLIVAQAVYV VHFLVELLHL 
VEAAFGSKDA LQALITSIGY KTTAPVGTLN ETVIMLVVLA LIDVVMISNL LIMVIVGGYE
TFVSRMDLEG HRDQPEWLSH VNASVLKVKL ATAIIGISSI HLLKTFINAD NYTDRVLIAQ
TVIHIAFLFS AMAIAYTDRL MAPAVPQGGG SH