Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2525 |
Symbol | |
ID | 7970002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2666373 |
End bp | 2667011 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644793112 |
Product | hypothetical protein |
Protein accession | YP_002944417 |
Protein GI | 239815507 |
COG category | [S] Function unknown |
COG ID | [COG2862] Predicted membrane protein |
TIGRFAM ID | [TIGR00645] conserved hypothetical transmembrane protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCAC CCGAATCCTT CGACCGCCCG AATACGCCTG TTCCAGCCCG CGGCTCGCCG CTGCGGCCGC TGCCCAAGCT GATTTTCGCG AGCCGCTGGC TGCAGCTGCC GCTCTACCTG GGGCTGATCG TGGCGCAGGC GGTGTACGTG GTGCACTTCC TGGTCGAGCT GCTGCACCTG GTGGAGGCGG CCTTCGGCAG CAAGGACGCG CTGCAGGCGC TGATCACCAG CATCGGCTAC AAGACCACCG CGCCGGTGGG CACGCTCAAC GAAACAGTGA TCATGCTGGT GGTGCTGGCG CTGATCGACG TGGTGATGAT CTCCAACCTG CTGATCATGG TGATCGTGGG CGGCTACGAA ACCTTCGTGA GCCGCATGGA CCTCGAAGGC CACCGCGACC AGCCCGAGTG GCTGAGCCAT GTGAACGCCT CGGTGCTCAA GGTCAAGCTG GCCACCGCCA TCATCGGCAT CAGCTCGATC CACCTGCTGA AGACCTTCAT CAACGCGGAC AACTACACCG ACCGCGTGCT GATTGCGCAG ACCGTGATCC ACATCGCCTT CCTGTTCTCG GCCATGGCCA TCGCCTACAC CGACAGGCTC ATGGCGCCCG CCGTGCCGCA GGGCGGCGGT TCGCACTGA
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Protein sequence | MSAPESFDRP NTPVPARGSP LRPLPKLIFA SRWLQLPLYL GLIVAQAVYV VHFLVELLHL VEAAFGSKDA LQALITSIGY KTTAPVGTLN ETVIMLVVLA LIDVVMISNL LIMVIVGGYE TFVSRMDLEG HRDQPEWLSH VNASVLKVKL ATAIIGISSI HLLKTFINAD NYTDRVLIAQ TVIHIAFLFS AMAIAYTDRL MAPAVPQGGG SH
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