Gene Vapar_2524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2524 
Symbol 
ID7970001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2665451 
End bp2666413 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content71% 
IMG OID644793111 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002944416 
Protein GI239815506 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACCGAT TGAATGCAAT GCGCGTGTTC GTCACCGTGG TGGATTCGGG CAGCCTTTCG 
GCCGCGGCCG ACAAGCTCGA CCTCTCGCGC CCGGTGGTCA CGCGCTACGT GGCCGAACTC
GAGCAATGGA CGGGTGCGCG CCTCTTGCAC CGCACGACGC GCCGGCTGAG CCTCACGGCG
GCGGGCGAGG AACTGCTGCC GCGCTGCCGC CAGGTGCTCG AGCTCGCGGG CGACATGCAG
GAGGCCGTGC GGCAGCCGGC CGAGGCGCCG CGCGGCCAGC TGCGCATCAC GGCCAGCACC
TCGTTCGCAC AGGCGCAGCT GGCCGATGCC GTGGCCGACT ACGTGCGGCT CCATCCCGGC
GTGGCGGTCG ACCTGGTGCT GCTGGACCGG GCGGTGAACC TGGTGGACGA GCGCATCGAC
CTGGCGATCC GCGTGGCGGT GGAGATCGAT CCCAACCTGA TTGCGCGGCG GCTCACCGAT
TGCCGCTCGG TGGTGTGCGC ATCACCCGGC TACCTGAAGG AGCACGGGCA GCCGCTGCGC
GTGGAGGAGC TGGCCCAGCG CAACTGCCTC ACGCACTCGT ACTTCGGGCG CAGCCTCTGG
AATTTCACGC GCAGGGAAGA CGGCACGCCC GTGTCGGTGG CCGTGGGCGG CAACGTGTCG
ACCAACGATG CCGCGAGCCT GATGCACCTG GCGCGGGCCG GGGCCGGCAT CGCGATGCTG
CCGACCTACC TGACCGCCGG CCTGCTGCAG GCCGGCGAAC TGGTGCGGCT GTTCCCGGAG
TTCGAGCCGC AGGTGGTCGG CATGTATGCG GTGTATGCCT CGCGCAAGCA CATGCCGGCC
ACGCTGCGCA CAATGCTCGA CTTTCTTGCC AGGCGTTTTA CCGGCGTGCC CGCCTGGGAC
CTGCCGCAGG CAGGCCCGGC GCTCAGTGCG AACCGCCGCC CTGCGGCACG GCGGGCGCCA
TGA
 
Protein sequence
MDRLNAMRVF VTVVDSGSLS AAADKLDLSR PVVTRYVAEL EQWTGARLLH RTTRRLSLTA 
AGEELLPRCR QVLELAGDMQ EAVRQPAEAP RGQLRITAST SFAQAQLADA VADYVRLHPG
VAVDLVLLDR AVNLVDERID LAIRVAVEID PNLIARRLTD CRSVVCASPG YLKEHGQPLR
VEELAQRNCL THSYFGRSLW NFTRREDGTP VSVAVGGNVS TNDAASLMHL ARAGAGIAML
PTYLTAGLLQ AGELVRLFPE FEPQVVGMYA VYASRKHMPA TLRTMLDFLA RRFTGVPAWD
LPQAGPALSA NRRPAARRAP