Gene Vapar_2523 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2523 
Symbol 
ID7970000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2664731 
End bp2665348 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content69% 
IMG OID644793110 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_002944415 
Protein GI239815505 
COG category[R] General function prediction only 
COG ID[COG2910] Putative NADH-flavin reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCACA TCGCCATCAT CGGCGCCACC GGACGCGCCG GCGGCCGCCT TCTCGAAGAG 
GCCCTGCGCC GCGGCCACAC CGTGACGGCC ATCGCGCGCA AGGCGAGCGA AAAACTCTCG 
GGCCGCACCA ACGTGAAGGC CATCGACCTC GACGTGCTCG ACAGCGCCGC GCTCGAAAAG 
GCACTGGCCG GCCACGACGC CGTCTTCAGC GCCGCGCACT TCTCCACCGT GCCGCCCGCG 
GCCATCATCG AGCCGGCCAA GCGCGCAGGC GTGAAGCGCC TGCTGGTGGT CGGCGGCGCC 
GGCAGCCTGT TCGCGGCGCC GGGCCTGAAG GTGATCGACA CGCCGAACTT CCCCGAGGCC 
TACAAGGCCG AGGCCACAGC CGGCGGCGTG TTCCTGGAGG CGCTGCGCAA CGAGAAGGAA 
CTCGACTGGA CTTTTCTCTC GCCCTCGGCC GAGTTCGTCG AAGGCGAGCG CACGGGCAAG 
TTCCGCCTGG GCAAGGACGA CCTGCTCGTG AGCGCCGAGG GGCGCAGCTG GATCACCTTC 
GAGGACTACG CGATCGCGTT CATCGACGAG CTCGAAAAAC CGGCGCACTC GCGCCAGCGC 
TACACCATCG GGTACTGA
 
Protein sequence
MSHIAIIGAT GRAGGRLLEE ALRRGHTVTA IARKASEKLS GRTNVKAIDL DVLDSAALEK 
ALAGHDAVFS AAHFSTVPPA AIIEPAKRAG VKRLLVVGGA GSLFAAPGLK VIDTPNFPEA 
YKAEATAGGV FLEALRNEKE LDWTFLSPSA EFVEGERTGK FRLGKDDLLV SAEGRSWITF 
EDYAIAFIDE LEKPAHSRQR YTIGY