| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2513 |
|---|
| Symbol | |
|---|
| ID | 7969987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2651209 |
|---|
| End bp | 2653650 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793097 |
|---|
| Product | ATP-dependent protease La |
|---|
| Protein accession | YP_002944405 |
|---|
| Protein GI | 239815495 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
|---|
| TIGRFAM ID | [TIGR00763] ATP-dependent protease La |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGTC ATACCCCCCT GCCTGCCGAC GCGATCGACC TGCCGCTGCT GCCGCTGCGC
GACGTGGTCG TGTTCCCTCA CATGGTGATC CCGCTGTTCG TGGGTCGCCC CAAGAGCATC
AAGGCGCTCG AACTGGCCAT GGAGGCCGAG CGCCGCATCA TGCTGGTGGC CCAGAAGGCC
GCCGCCAAGG ACGAGCCCTC GGTCGAGGAC ATGTTCGAGG TGGGTTGCGT CTCGACCATC
CTGCAGATGC TCAAGCTGCC TGACGGCACC GTGAAGGTGC TGGTCGAAGG CCAGCAGCGC
GCCCGCGTGA ACCGCATCGA CGACGGCGAG ACCCACTTCT CGGCCAACGT GACGCCCGTC
GAGGCGGCCG CGAGCAGCGA GAAGGGCACC GAGGTCGAGG CGCTGCGCCG TGCCGTGATG
CAGCAGTTCG ACCAGTACGT CAAGCTCAAC AAGAAGATCC CGCCCGAGAT CCTCACGTCG
ATCTCCAGCA TCGACGATCC GGGCCGCCTG GCCGACACCA TCGCCGCGCA CCTGCCGCTC
AAGCTCGACA ACAAGCAGGC CGTGCTCGAC CTGGACGACG TCAAGTCGCG CCTGGAGAAC
CTGTTCGGCC AGCTCGAGCG CGAGGTCGAC ATCCTCAACG TCGACAAGAA GATCCGCGGC
CGCGTGAAGC GCCAGATGGA AAAGAACCAG CGCGACTTCT ATCTCAACGA GCAGGTCAAG
GCGATCCAGA AGGAGCTCGG CGAAGGCGAA GAGGGCGCGG ACATCGAGGA GATCGAGAAG
AAGATCAAGC TCGCCAAGAT GCCCAAGGAA GCGCTCAAGA AGGCCGAGGG CGAGCTCAAG
AAGCTCAAGC TGATGTCGCC CATGTCGGCC GAGGCCACCG TGGTGCGCAA CTACATCGAC
GTGCTGGTCG GCCTGCCCTG GAGCAAGAAG ACCAAGATCA AGCACGACCT GGCCAATGCC
GAGGCGGTGC TCAATGCCGA CCACTACGGC CTGGAGAAGG TCAAGGACCG CATCCTCGAA
TATCTCGCGG TGCAGCAGCG CGTCGACAAG GTCAAGGCGC CCATCCTGTG CCTCGTGGGC
CCGCCCGGCG TGGGCAAGAC CTCGCTCGGG CAGTCGATCG CCAAGGCGAC CGGCCGCAAG
TACACCCGCA TGGCGCTGGG CGGCATGCGC GACGAGGCCG AGATCCGCGG CCACCGCCGC
ACCTACATCG GCGCACTGCC GGGCAAGGTG CTGCAGGGGC TGAGCAAGAT CGGCACGCGC
AATCCGCTGT TCCTGCTCGA CGAAATCGAC AAGCTGGGCA CCGACTTCCG CGGCGACCCG
TCGAGTGCGC TGCTCGAGGT GCTCGACCCC GAGCAGAACC ACACCTTCGG CGACCACTAC
GTCGAGGTCG ACTTCGACCT GTCCGACGTG ATGTTCGTCG CCACCTCGAA CTCGATGAAC
ATCCCGCCGG CGCTGCTCGA CCGGATGGAA GTCATCCGCC TCTCGGGCTA CACCGAGGAC
GAGAAGACCA ACATCGCGAT CAAGTACCTG CTGCCCAAGC AGATGAAGAA CAACGGCGTC
AAGGAAGACG AACTGCTCGT CACCGAAGAG GCCGTGCGCG GCATCGTGCG CTACTACACG
CGCGAAGCCG GTGTGCGTTC GCTCGAGCGC GAGCTTTCCA AGATCTGCCG CAAGGTGGTC
AAGGGCCTGC TGCTCAAGCA GATGACGCCC AAGGTCACGG TGGATGGCTC CAACCTCAAC
GACTTCCTGG GCGTGCGCAA GTACAGCTTC GGACTGGCCG AGAAGCAGAA CCAGGTGGGC
CAGGTGGTCG GCCTGGCCTG GACCGAGGTG GGCGGCGACC TGCTCACCAT CGAGGCGGTC
ACCATGCCCG GCAAGGGCGT GATCAGCCGC ACCGGATCGC TGGGCGACGT GATGAAGGAA
TCGGTCGAGG CCGCGCGCAC CGTGGTGCGC AGCCGCTCGC GCCGCCTGGG CATCAAGGAC
GAGGTGTTCG AGAAGCGCGA CATCCACATC CACGTGCCCG ATGGCGCAAC GCCCAAGGAC
GGCCCGAGCG CGGGTGCGGC CATGACCACG GCCTTCGTGT CGGCGCTCAC GGGCATTCCC
GTGCGTGCAG ACGTTGCCAT GACGGGCGAG ATCACGCTGC GCGGCGAGGT CACGGCCATC
GGCGGCCTGA AGGAAAAGCT GCTGGCCGCA TTGCGCGGCG GCATCAAGAC CGTGTTGATT
CCCGAGGAAA ACGCGAAGGA CCTGCAGGAC ATTCCCGAGA ACGTGAAGAA CGGCCTCGAG
ATCGTGCCCG TGAAGTGGAT CGACAAGGTC CTGGAGATCG CGCTCGAGAA GATGCCCGAG
CCGCTGTCGG ACGAGGAGGT TGCCGCCTCC GCGGCCGCCG TGGCCGAGCT GGCCAAGCAA
CGTGCGGGCA CGCCGGCTTC AGAGGGTTCC GTCAAACATT GA
|
|---|
| Protein sequence | MSGHTPLPAD AIDLPLLPLR DVVVFPHMVI PLFVGRPKSI KALELAMEAE RRIMLVAQKA
AAKDEPSVED MFEVGCVSTI LQMLKLPDGT VKVLVEGQQR ARVNRIDDGE THFSANVTPV
EAAASSEKGT EVEALRRAVM QQFDQYVKLN KKIPPEILTS ISSIDDPGRL ADTIAAHLPL
KLDNKQAVLD LDDVKSRLEN LFGQLEREVD ILNVDKKIRG RVKRQMEKNQ RDFYLNEQVK
AIQKELGEGE EGADIEEIEK KIKLAKMPKE ALKKAEGELK KLKLMSPMSA EATVVRNYID
VLVGLPWSKK TKIKHDLANA EAVLNADHYG LEKVKDRILE YLAVQQRVDK VKAPILCLVG
PPGVGKTSLG QSIAKATGRK YTRMALGGMR DEAEIRGHRR TYIGALPGKV LQGLSKIGTR
NPLFLLDEID KLGTDFRGDP SSALLEVLDP EQNHTFGDHY VEVDFDLSDV MFVATSNSMN
IPPALLDRME VIRLSGYTED EKTNIAIKYL LPKQMKNNGV KEDELLVTEE AVRGIVRYYT
REAGVRSLER ELSKICRKVV KGLLLKQMTP KVTVDGSNLN DFLGVRKYSF GLAEKQNQVG
QVVGLAWTEV GGDLLTIEAV TMPGKGVISR TGSLGDVMKE SVEAARTVVR SRSRRLGIKD
EVFEKRDIHI HVPDGATPKD GPSAGAAMTT AFVSALTGIP VRADVAMTGE ITLRGEVTAI
GGLKEKLLAA LRGGIKTVLI PEENAKDLQD IPENVKNGLE IVPVKWIDKV LEIALEKMPE
PLSDEEVAAS AAAVAELAKQ RAGTPASEGS VKH
|
|---|
| |