Gene Vapar_2512 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2512 
SymbolclpX 
ID7969905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2649824 
End bp2651089 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content63% 
IMG OID644793096 
ProductATP-dependent protease ATP-binding subunit ClpX 
Protein accessionYP_002944404 
Protein GI239815494 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGAAA AAAAAGGCTC CTCCAGCGAA AAAACGCTTT ATTGCTCGTT CTGCGGCAAG 
AGCCAGCATG AGGTCAAGAA GCTGATCGCG GGCCCTTCGG TCTTCATTTG CGACGAGTGC
ATCGACCTTT GCAACGAAAT CATCCGCGAC GAGCTCCCGG CCGGTGAAGA GGCGCGCGAG
GCGCGCAGCG ACCTGCCCAC GCCGCTGGAA ATCAAGACCA ACCTCGACAA CTACGTGATC
GGCCAGGAGC CGGCCAAGCG CATGCTGTCG GTGGCGGTCT ACAACCACTA CAAGCGCCTG
CGCCACAAGG AAAAGGCCAA GGGCGACGAC GTCGAGCTCA GCAAGAGCAA CATCCTCCTG
ATCGGCCCCA CGGGCTCGGG CAAGACGCTG CTCGCGCAAA CGCTCGCGCG CATGCTCGAC
GTGCCCTTCG TGATGGCCGA CGCCACCACG CTGACCGAAG CCGGCTACGT GGGCGAGGAC
GTCGAGAACA TCATCCAGAA GCTGCTGCAA AGCTGCAACT ACGAAGTCGA GCGCGCCCAG
CGCGGCATCG TCTACATCGA CGAGATCGAC AAGATCTCGC GCAAGTCGGA CAACCCGTCC
ATCACGCGCG ACGTGTCGGG GGAGGGCGTG CAGCAGGCGC TGCTCAAGCT CATCGAAGGC
ACCATGGCCA GCGTGCCGCC ACAGGGCGGG CGCAAGCACC CGAACCAGGA CTTCCTGCAG
ATCGACACGA CCAACATCCT GTTCATCTGC GGCGGCGCCT TTGCCGGCCT CGAGAAGGTC
ATCGAGAACC GCACCGAGGC CTCGGGCATC GGCTTCGGCG CCTCGGTCAA GAGCAAGGCG
CAGCGCAGCA TCACCGAGGT GTTCCGCGAG GTCGAGCCCG AAGACCTGAT CAAGTTCGGC
CTGATCCCCG AACTGGTGGG CCGCATGCCC GTGGTCGCCT CGCTGGCCGA GCTCAGCGAA
GACGCGCTGG TGCAGATCCT GACCGAGCCC AAGAACGCCG TGGTCAAGCA GTTCACCAAG
CTGCTGCAGA TGGAAGGCGT CGACCTGGAG ATCCGTCCCG CGGCGCTCAA GGCCATTGCA
CGCAAGGCGC TGGCCCGCAA GACCGGCGCG CGGGGCCTGC GTTCGATCCT CGAACAGTCG
CTGATCGACA CCATGTTCGA GCTGCCGAAT GCCACCAACG TCGACAAGGT TGTGGTCGAG
GAATCCACAA TTGATGAAAA CAAGCCGCCG CTGCTCGTGT ACCGCGAAGC GGCCAAGAAG
GCCTGA
 
Protein sequence
MAEKKGSSSE KTLYCSFCGK SQHEVKKLIA GPSVFICDEC IDLCNEIIRD ELPAGEEARE 
ARSDLPTPLE IKTNLDNYVI GQEPAKRMLS VAVYNHYKRL RHKEKAKGDD VELSKSNILL
IGPTGSGKTL LAQTLARMLD VPFVMADATT LTEAGYVGED VENIIQKLLQ SCNYEVERAQ
RGIVYIDEID KISRKSDNPS ITRDVSGEGV QQALLKLIEG TMASVPPQGG RKHPNQDFLQ
IDTTNILFIC GGAFAGLEKV IENRTEASGI GFGASVKSKA QRSITEVFRE VEPEDLIKFG
LIPELVGRMP VVASLAELSE DALVQILTEP KNAVVKQFTK LLQMEGVDLE IRPAALKAIA
RKALARKTGA RGLRSILEQS LIDTMFELPN ATNVDKVVVE ESTIDENKPP LLVYREAAKK
A