| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2505 |
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| Symbol | |
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| ID | 7969570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2639254 |
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| End bp | 2640093 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793088 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_002944397 |
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| Protein GI | 239815487 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.522879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCCCG AGCAATACGT ACAGGACAAG GCCGCCGCCT CGGGCAGCAG TTTCTATTAC
GCCTTTCTGT TCCTTCCCAA GCCGCGGCGC GCCGCGATCA CGGCCTTCTA TGCCTTCTGC
CGCGAGATCG ACGACGTGGT CGACGAGGTC AGCGACCCCG GCGTGGCCGC GACCAAGCTC
GCCTGGTGGC GCACCGAGGT GGCGCAGTCC TTTGCGGGAC CGCCGCGCCA CCCCGTGATG
CAGGCGCTGG TGCCGCATGC CGCCACCTAC GGCATCGAGC CCGCCCAGCT CAACGAGGTG
ATCGACGGCT GCCAGATGGA CCTCGAGCAG ACCCGCTACC TCGACTTTCC CGGCCTCGCG
CGCTACTGCC ACCTGGTGGC CGGCGTGGTG GGCGAAGTCG CTGCGCGCAT CTTCGGCCAG
ACCGACCCGC AGACCACCGC CTATGCGCAC AAGCTCGGGC TGGCGCTGCA GCTCACCAAC
ATCATTCGCG ACGTTGGCGA GGACGCGCTG CGCGGCCGCA TCTACCTGCC CGTGAACGAA
CTGCAGAAAT TCGACGTCAA GGCGCACGAG ATCCTGAACC GCGTGCATTC GGAGCGCTTC
GTCGCGCTCA TGAAGTTCCA GGCCGAGCGC GCGCATGCGG CATACGACGA AGCCCTCGCC
CTGCTGCCCG CCCCCGACCG CCGCGCCCAG AAGCCCGGCC TCATGATGGC CAGCATCTAC
CGCACGCTGC TGCGCGAGAT CGAGCGCGAC AACTTCCAGG TGCTGAACCA GCGCGTGAGC
CTGACGCCGG TGCGCAAGTT CTGGCTGGCG TGGAAGGTTC AAGCCTTGGG GCGCATTTGA
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| Protein sequence | MTPEQYVQDK AAASGSSFYY AFLFLPKPRR AAITAFYAFC REIDDVVDEV SDPGVAATKL
AWWRTEVAQS FAGPPRHPVM QALVPHAATY GIEPAQLNEV IDGCQMDLEQ TRYLDFPGLA
RYCHLVAGVV GEVAARIFGQ TDPQTTAYAH KLGLALQLTN IIRDVGEDAL RGRIYLPVNE
LQKFDVKAHE ILNRVHSERF VALMKFQAER AHAAYDEALA LLPAPDRRAQ KPGLMMASIY
RTLLREIERD NFQVLNQRVS LTPVRKFWLA WKVQALGRI
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