| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2504 |
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| Symbol | |
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| ID | 7969569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2637998 |
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| End bp | 2639242 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644793087 |
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| Product | squalene-associated FAD-dependent desaturase |
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| Protein accession | YP_002944396 |
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| Protein GI | 239815486 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2907] Predicted NAD/FAD-binding protein |
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| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.717786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGTGCCG GCTGGGCCGG CCTCGCCTGC GCCGTCGAAG CCACGCGGCT CGGCCATGCC
GTGACGCTTT ATGAAGCGGC GCACATGGCG GGCGGGCGCG CGCGGCGGGT CGACCACATG
CACGGGCTGG TGCTCGACAA CGGGCAGCAC ATCCTGATCG GCGCCTACGC CGCAACGCTC
AGGCTGATGC GCGAAGTGGG CATCGATGCC GGCCAGGCGC TGCTGCGGCT GCCGCTCTCG
CTGCGCTTTG CCGATGGCGG CGGCCTGAAG CTGCCGCGGC TGCCTGCACC GCTCGACCTG
CTGGCCGGCA TCTTCACGGC GCGTGGCTGG ACGTGGCGGG ACAAGTCCAC GCTGCTGCGC
ACCGCCGTGC AATGGCGCCT CACCGGATTC CGCTGCGCCG CCGGCACCAC CGTGGCCGCG
CTCTGCACCG GCCTCACGCC GCGCGTGATG GAGGAGCTGA TCGAGCCGCT GTGCGTGTCC
GCCCTCAACA CGCCGGTCGA CCAGTCGAGC GGCGAGGTGT TCCTGCGCGT GCTGCACGAC
GCCCTCTTCA GCGGCAGCGG CGGCGCGGAC CTGCTGCTGC CGCGCGTCGA CCTGGGCGCG
CTCTTTCCCG ACGCGGCCCT GGCGTGGCTT GCGCAGCACG ACGCAACGCT GCGCATCGGC
ACGCGCGTGC ACGCCATCTC GCCCGAGGGC GCGGCATGGC GAGTCGACGG CGAGCGCTTC
GACCACGTCG TTCTGGCGTG TGCGCCCTGG GACGCGGCTC GGCTCGTGCG CGCGTCCGGC
GCGGCGGCGC AGCGCTGGTG CGAAAGCACC GAGGCGCTGC GCTTCGAGGC CATTGCCACG
GTCTATGTGC GCGGCGCCTC GCCGCTTGCG GAGCCGATGC TGGCGCTGCG CAGCCATCCC
GCCACCGCGC CGGCCCAGTT CGTGTTCGAT CGCGGCCAGC TCGGCGGACC CGAAGGCGTG
CTCGCCATGG TGGTGAGCGC GAACGAGACG CCGCGCGAAA CGCTGGAGCA GCAGGCGCTT
GCGCAAGCCG CCGTGCAGCT CGGCCAGGCG GCGCTGCACA TCGTGCAGAC CGTGGTCGAA
AAGCGCGCCA CCTTCGCCTG CACGCCTGCG CTCGCACGGC CGCCGATGCG CATCGCACCC
GGCCTGCACG CCTGCGGCGA CTACACCGAA GGCCCCTACC CTGCGACACT CGAAGGCGCG
GTCCTGAGCG GACTGGCTGC CGCCAAGGCA TCGACAACAC CATGA
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| Protein sequence | MGAGWAGLAC AVEATRLGHA VTLYEAAHMA GGRARRVDHM HGLVLDNGQH ILIGAYAATL
RLMREVGIDA GQALLRLPLS LRFADGGGLK LPRLPAPLDL LAGIFTARGW TWRDKSTLLR
TAVQWRLTGF RCAAGTTVAA LCTGLTPRVM EELIEPLCVS ALNTPVDQSS GEVFLRVLHD
ALFSGSGGAD LLLPRVDLGA LFPDAALAWL AQHDATLRIG TRVHAISPEG AAWRVDGERF
DHVVLACAPW DAARLVRASG AAAQRWCEST EALRFEAIAT VYVRGASPLA EPMLALRSHP
ATAPAQFVFD RGQLGGPEGV LAMVVSANET PRETLEQQAL AQAAVQLGQA ALHIVQTVVE
KRATFACTPA LARPPMRIAP GLHACGDYTE GPYPATLEGA VLSGLAAAKA STTP
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