| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2474 |
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| Symbol | |
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| ID | 7969539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2617139 |
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| End bp | 2618590 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793057 |
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| Product | major capsid protein HK97 |
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| Protein accession | YP_002944366 |
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| Protein GI | 239815456 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.690827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGC ATTCGCTGGC CCTGACCGCC TTGGCAGTCG CCGCAGCCTT CGGCCTCTCG
GCCGCCGCCA TCGTGCGCAA CGATTCCGTT GCCACCCTCG ACACCCTGCA GAACCGGCTC
ATCGAGCTCA AGGACGCGGG CAACAACATC CAGGCCCGCG CCGATGCCGA AAAGCGCGAC
CTGACCGCTG ACGAGCAGGA AGAGATCAAG CAGATCTTCG CCTCGTTCGA AGCTGTCGAG
GCCGACATCG AGCGCCGCGA ACAGCTGGAC GCGATGAACG CCAAGATCTC GCAGCCCGCC
GGCCGCAAGA CCGCACCCGA GTTGCAGGAC GACGACGAGC CCGCACAGCC GCAGGCCCGC
ACGACCGCCA AGCACAAGCC GATCTTCGCC ACCCCGCGCT CGGCCGACGC CAACAAGTGG
GGTTTCCGCT CCCAAGCCGA GTTCTTCAAC GCCGTGGTGA AGTCGTCCGC CAAGGGTGCG
CAGACCGACC CGCGCCTGAT CGCCAACGCG CCGACCACGT TCGGCTCGGA AGGCGTTGGC
GCCGACGGTG GCTTCGCCGT GCCGCCGGAC TTCCGCAACA CCATCATTCA GAAGGTGATG
GGTGAGGACT CGCTGCTGTC TCTGACCGAC CAACAAATCA GTTCGGGCAA CAGCATCACG
TTCCCGGCCG ACGAAACCAC CCCGTGGCAG TCGAGCGGCG GCATCCAGGC CTACTGGGAA
GTCGAAGGCG GCCAGAAGAC GCAATCGAAG CCTGCGCTGG TCGAGAAGAC CGTGAAGCTG
AACAAGGTGA TCGCACTGGT GCCGCTCACC GACGAACTGC TGGAAGACGC GCCGGCCATG
GCCAGCTACG TCAACCGCAA GGCGCCGGAG AAGATCGTGT TCAAGGTGAA CGACGCCATC
ATCAACGGCA CCGGCGTTGG CATGCCCTTG GGTATCCTGA AGTCGCCCGG CACGGTGATC
GTCGCCAAGG AAGGCAGCCA GACCGCCGAC ACGGTGGTTT TCGCCAACCT GACCAAGATG
TGGACGTCCC TGACGCCAAT GGCACGCCGC AATGCGCGCT GGCTCATGAA CGCCGACGTC
GAAGGCCAGC TGATGGGCAT GTCCTTCCCC GGCACCGGCA CCGCGGTTCC CGTCTACATG
CCGCCTGGCG GCCTCTCGGC TGCCCCCTAC GGCACGCTGT TCGGTCGTCC GATCATGTAC
TCGGAAGCCA TGCCGGCCCT GGGCGATGAA GGCGACATCC TGTTCGGCGA CCTGTCGAAC
TACCTGTCGG GCGTGAAGGC CGGCGGCGTC AAGTCGGACG TGTCGATCCA CGTCTGGTTC
GATTACGACA TCACCGCGTT CCGCTTCGTG CTGCGCGTCG GTGGCCAGCC GTGGTGGAAC
GCTCCAGTCG CGCCGTACCA AGCCGGCGCA TCGAGCCGCG GCTTCTTCGC TGCCCTGGGC
GCTCGCGCCT GA
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| Protein sequence | MKKHSLALTA LAVAAAFGLS AAAIVRNDSV ATLDTLQNRL IELKDAGNNI QARADAEKRD
LTADEQEEIK QIFASFEAVE ADIERREQLD AMNAKISQPA GRKTAPELQD DDEPAQPQAR
TTAKHKPIFA TPRSADANKW GFRSQAEFFN AVVKSSAKGA QTDPRLIANA PTTFGSEGVG
ADGGFAVPPD FRNTIIQKVM GEDSLLSLTD QQISSGNSIT FPADETTPWQ SSGGIQAYWE
VEGGQKTQSK PALVEKTVKL NKVIALVPLT DELLEDAPAM ASYVNRKAPE KIVFKVNDAI
INGTGVGMPL GILKSPGTVI VAKEGSQTAD TVVFANLTKM WTSLTPMARR NARWLMNADV
EGQLMGMSFP GTGTAVPVYM PPGGLSAAPY GTLFGRPIMY SEAMPALGDE GDILFGDLSN
YLSGVKAGGV KSDVSIHVWF DYDITAFRFV LRVGGQPWWN APVAPYQAGA SSRGFFAALG
ARA
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