| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2449 |
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| Symbol | |
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| ID | 7969513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2602342 |
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| End bp | 2602830 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644793031 |
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| Product | Fimbrial protein pilin |
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| Protein accession | YP_002944341 |
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| Protein GI | 239815431 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000426279 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACGTTC GTACCCTCCG CAGCCGCGCA CAAGCTGGCT TCACCCTTAT CGAATTGATG
ATCGTTGTCG CGATCATCGG CATCCTGGCT GCTGTCGCTC TGCCGGCTTA TCAGGACTAC
ACCGCAAAAG CCCAGATCAC CGAAGCGATC ACCCTGGCTG ACGGCGTGAA GAAGAACATC
GAACTCAGCT TCCCGCAAGA CAATACCTGC CCGGCCAATG CCTCTGCCGC GGTTGGCGAC
ATTGGGATCA AGACCGACAT CAACGGCAAG TACATCCTGA GCGTTGAAAG CGCCGGCACT
GCCGCAACCA CCGGCGGCTG CACTGTGAAA TCGACGTTCC GCGGCACGGG CGTCAACCCC
AAGTTGGTCA GCAAGACCAT CACCTATGCG CTGGTCTATT CGGTGAATGG TTCCAAGTGG
ACCTGCGAAA CCGACGTGGA TGCTTCGATC CGCCCGAAGA CCTGCGGCGC CACTGGCTCG
CCGATCTAA
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| Protein sequence | MNVRTLRSRA QAGFTLIELM IVVAIIGILA AVALPAYQDY TAKAQITEAI TLADGVKKNI
ELSFPQDNTC PANASAAVGD IGIKTDINGK YILSVESAGT AATTGGCTVK STFRGTGVNP
KLVSKTITYA LVYSVNGSKW TCETDVDASI RPKTCGATGS PI
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