| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2426 |
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| Symbol | |
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| ID | 7970470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2590574 |
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| End bp | 2591662 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644793008 |
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| Product | integrase family protein |
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| Protein accession | YP_002944318 |
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| Protein GI | 239815408 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.300421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAC GTCCACGAGC CCGGCCGCGC CGGGAATGGC CCACCGGCCT TCATGAGTCA
CGGCCGGGGT ATTTCGTCTG GTTCAACCCG GTCGCCAAGA AGTATGTCGC GATTGGGCGA
GTGACGCTGG CCGACGCTCG GCTCCAAGCC ATCGAGGCCA ATCTGTGGGC GTCCGAGCAA
CTCGGGAAAG CTCGCCTGAT CGACAGGCTG CAACAGAAGG ACAAGACAGT TCGCGAATGG
CTCAAGGAGT GGATTGGGGA GTTGACCCTT GCCGAGAACA CCCTGAAGAG CTACAGGGCG
AAGTCGAAGG CCATCAACGA AGAGATGGGC GACCTTGCGC TGGGCCGGCT GACCGTGAAG
GACACGGCCA ATGCGCTGGA CGAGATCAAG AAAAAGCGCG GGGCACCCAC GGCGCAGGTG
GCCCGGTCGG TCCTGATTTC GGCCTTTGGC AACGCGATCA CCAAGGGGCA CATGGAAACC
AACCCGGCCT TGGTGACTGA GGCGAAGAAG ACGACCGTTG CCCGCCAGCG CTTCACGACT
GCCACCTTCG AGAAGGTTTG GGCGGGCCTG CAAGATGGGC CGCCATGGCT CCGCAATGCA
ACGCTGCTGG CGATGATCAC AGGGCTGCGC CGCGAAGACA TTGCAGGGCT GAAGTTCACC
GATGTGGCGG ATGACTACCT GCTGGTTGCG CCGAAGAAAT CACAGGGCAT GGTGAAGATC
GCCATCCCCC TCGCGCTCTA CTCGGAGGCG ATGAAGATGA GCCTGAAGGA TGCCATCGCC
GTGTGCCGCC GAACCGGCGT CGTCAGCCAG TACATGGTCC ACCAGACGGA GCACACGGGC
CGAAGCTCGC CGGGCCAGCG AATGTCCCTC AGCACCGTCA CCATGCGGTT CTCTGAATAC
GTCGCGAAGG CGCTGGGCGA AGGCGAGAAC CTGCCGACCT TCCATGAGCT GCGCAGCCTC
TGCAAGCGCT CGTACCAGGC ACAGGGCGGC GTAGATACCA AGGCACTGCT CGGCCACCTG
GCGGACAGTT CCGCGGACCT CTACGAAAAC AATCGCGGCG CCGAGTTCAA GAAGGTGAAA
ATTGGCTGA
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| Protein sequence | MAARPRARPR REWPTGLHES RPGYFVWFNP VAKKYVAIGR VTLADARLQA IEANLWASEQ
LGKARLIDRL QQKDKTVREW LKEWIGELTL AENTLKSYRA KSKAINEEMG DLALGRLTVK
DTANALDEIK KKRGAPTAQV ARSVLISAFG NAITKGHMET NPALVTEAKK TTVARQRFTT
ATFEKVWAGL QDGPPWLRNA TLLAMITGLR REDIAGLKFT DVADDYLLVA PKKSQGMVKI
AIPLALYSEA MKMSLKDAIA VCRRTGVVSQ YMVHQTEHTG RSSPGQRMSL STVTMRFSEY
VAKALGEGEN LPTFHELRSL CKRSYQAQGG VDTKALLGHL ADSSADLYEN NRGAEFKKVK
IG
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