Gene Vapar_2414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2414 
Symbol 
ID7970458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2579303 
End bp2580847 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content70% 
IMG OID644792997 
Productsigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002944307 
Protein GI239815397 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.59503 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGCCG TTCCGCCCGC CGCCGCATCG CCCGCCCTGC CTCTGGATGC CGAAGGCATC 
CTTGCGCTGG CCGCGCGCTC GATGTTCCAT CTGTTCTCGA GCATCAGCCA GGGCATGTTC
CTGGTGGACC GCAGCGGGCG CATCGTGTGG GTCAACGAAG GCTATCGCCG CTTCCTGCCG
GCGCTGGGCT TTTCCTCGAT CGACCAGTTC CTCGGACACA TGGTCGAGGA CGTCATTCCC
AACACGCAGA TGCGGCGCGT GCTCGAGACC GGCGAGCCGA TCCTGGTCGA CCTGCTCGAC
AACAAGGCGG GCACCTTCGT GGTCAGCCGC ATCCCGCTGC GCGCCGAAAG CGACGGGCGC
GCGGGGCGGG CGGGAGAAGT CATCGGCGCC ATCGGCATCG TGCTGTTCGA CCAGCCCGAG
ACCACGCTGC AGCCGCTCAT CAGCAAGTTC GCGCTGCTGC AGCGCGACCT CGACGACGCG
CGGCGCGAGC TCGCCACCCA GCGCAACAAC CCGCTCTACC AGCACGCCGC CGACGGGCAG
CGCCGCTCCA AGTACACCTT TGCCAGCTTC ATCGGCAGCA GCCCGGCCGC GGTGGAGGTC
AAGCGCCATG CGCGGCGCGC CGCGCAGTCC GCGAGCCCGG TGCTGCTGCT GGGCGAAACG
GGCACCGGCA AGGAACTGCT CGCACATGCC ATCCATGCGG CCTCGGCGCG GGCCAAGGGG
CAGTTCGTCA GCGTCAACAT CGCGGCCGTG CCGGACACCT TGCTGGAGGC CGAGTTCTTC
GGCTTCGCGC CGGGTGCCTT CACCGGCGCC GACAGGCGAG GGCGCGAGGG CAAGTTCAAG
CTGGCCGACG GCGGCAGCCT GTTCCTCGAC GAGATCGGCG ACATGCCGCT CGGCCTGCAG
GCCAAGCTGC TGCGCGCATT GCAGGAGGGC GAGATCGAGC CGCTCGGCTC CAACAAGCTG
GTGCCCTTCG ATGCGCGCGT GATCGCCGCC ACCTCGCGCG ACCTGCCCGA GCTGGTGCGC
CGCGGCCAGT TCCGCGAAGA CCTGTACTAC CGCCTCAACG TGCTGCCCTT GCGCGTGCCG
CCGCTGCGCG AGCGGCGCAG CGACATTCCG GCGCTGGTCG AAGCGCTGGG CGAAGACATG
GCGCTGCGCA GCGGCGAAGC GCCGCCCGAG CTCACGCCCG ATGCGCTCGC GCTGCTGGCC
GGCCAGCACT GGCGCGGCAA CATCCGCGAG CTGCGCAACG TGCTGGAGCA GGTCACGATG
CGCAGCGACT CGCAGCGCAT CGACGCCGCG CAGCTCGAGC GCATCCTGCG CGAAGCCGGG
CTGGAGCAGA TCGAATTGCC CGCCACGCTG CAGAGCGCGC ACGACGCCGA CGAAGAGGCG
CTGCTGCTGC GGCCGCTCGC GCAGCAGGTG GCCGAGCTGG AGCGCAAGGC GATTGCCGCG
GCGCTCACGG CCACCGGCGG CAACAAGCTG GCCACGTCGA GGCTGCTCGG CATTTCGCGC
GCCACGCTCT ACGAGCGCAT GACGAACCAG GAGCGGCCGG CGTGA
 
Protein sequence
MSAVPPAAAS PALPLDAEGI LALAARSMFH LFSSISQGMF LVDRSGRIVW VNEGYRRFLP 
ALGFSSIDQF LGHMVEDVIP NTQMRRVLET GEPILVDLLD NKAGTFVVSR IPLRAESDGR
AGRAGEVIGA IGIVLFDQPE TTLQPLISKF ALLQRDLDDA RRELATQRNN PLYQHAADGQ
RRSKYTFASF IGSSPAAVEV KRHARRAAQS ASPVLLLGET GTGKELLAHA IHAASARAKG
QFVSVNIAAV PDTLLEAEFF GFAPGAFTGA DRRGREGKFK LADGGSLFLD EIGDMPLGLQ
AKLLRALQEG EIEPLGSNKL VPFDARVIAA TSRDLPELVR RGQFREDLYY RLNVLPLRVP
PLRERRSDIP ALVEALGEDM ALRSGEAPPE LTPDALALLA GQHWRGNIRE LRNVLEQVTM
RSDSQRIDAA QLERILREAG LEQIELPATL QSAHDADEEA LLLRPLAQQV AELERKAIAA
ALTATGGNKL ATSRLLGISR ATLYERMTNQ ERPA