Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2414 |
Symbol | |
ID | 7970458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2579303 |
End bp | 2580847 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644792997 |
Product | sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_002944307 |
Protein GI | 239815397 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.59503 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCCG TTCCGCCCGC CGCCGCATCG CCCGCCCTGC CTCTGGATGC CGAAGGCATC CTTGCGCTGG CCGCGCGCTC GATGTTCCAT CTGTTCTCGA GCATCAGCCA GGGCATGTTC CTGGTGGACC GCAGCGGGCG CATCGTGTGG GTCAACGAAG GCTATCGCCG CTTCCTGCCG GCGCTGGGCT TTTCCTCGAT CGACCAGTTC CTCGGACACA TGGTCGAGGA CGTCATTCCC AACACGCAGA TGCGGCGCGT GCTCGAGACC GGCGAGCCGA TCCTGGTCGA CCTGCTCGAC AACAAGGCGG GCACCTTCGT GGTCAGCCGC ATCCCGCTGC GCGCCGAAAG CGACGGGCGC GCGGGGCGGG CGGGAGAAGT CATCGGCGCC ATCGGCATCG TGCTGTTCGA CCAGCCCGAG ACCACGCTGC AGCCGCTCAT CAGCAAGTTC GCGCTGCTGC AGCGCGACCT CGACGACGCG CGGCGCGAGC TCGCCACCCA GCGCAACAAC CCGCTCTACC AGCACGCCGC CGACGGGCAG CGCCGCTCCA AGTACACCTT TGCCAGCTTC ATCGGCAGCA GCCCGGCCGC GGTGGAGGTC AAGCGCCATG CGCGGCGCGC CGCGCAGTCC GCGAGCCCGG TGCTGCTGCT GGGCGAAACG GGCACCGGCA AGGAACTGCT CGCACATGCC ATCCATGCGG CCTCGGCGCG GGCCAAGGGG CAGTTCGTCA GCGTCAACAT CGCGGCCGTG CCGGACACCT TGCTGGAGGC CGAGTTCTTC GGCTTCGCGC CGGGTGCCTT CACCGGCGCC GACAGGCGAG GGCGCGAGGG CAAGTTCAAG CTGGCCGACG GCGGCAGCCT GTTCCTCGAC GAGATCGGCG ACATGCCGCT CGGCCTGCAG GCCAAGCTGC TGCGCGCATT GCAGGAGGGC GAGATCGAGC CGCTCGGCTC CAACAAGCTG GTGCCCTTCG ATGCGCGCGT GATCGCCGCC ACCTCGCGCG ACCTGCCCGA GCTGGTGCGC CGCGGCCAGT TCCGCGAAGA CCTGTACTAC CGCCTCAACG TGCTGCCCTT GCGCGTGCCG CCGCTGCGCG AGCGGCGCAG CGACATTCCG GCGCTGGTCG AAGCGCTGGG CGAAGACATG GCGCTGCGCA GCGGCGAAGC GCCGCCCGAG CTCACGCCCG ATGCGCTCGC GCTGCTGGCC GGCCAGCACT GGCGCGGCAA CATCCGCGAG CTGCGCAACG TGCTGGAGCA GGTCACGATG CGCAGCGACT CGCAGCGCAT CGACGCCGCG CAGCTCGAGC GCATCCTGCG CGAAGCCGGG CTGGAGCAGA TCGAATTGCC CGCCACGCTG CAGAGCGCGC ACGACGCCGA CGAAGAGGCG CTGCTGCTGC GGCCGCTCGC GCAGCAGGTG GCCGAGCTGG AGCGCAAGGC GATTGCCGCG GCGCTCACGG CCACCGGCGG CAACAAGCTG GCCACGTCGA GGCTGCTCGG CATTTCGCGC GCCACGCTCT ACGAGCGCAT GACGAACCAG GAGCGGCCGG CGTGA
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Protein sequence | MSAVPPAAAS PALPLDAEGI LALAARSMFH LFSSISQGMF LVDRSGRIVW VNEGYRRFLP ALGFSSIDQF LGHMVEDVIP NTQMRRVLET GEPILVDLLD NKAGTFVVSR IPLRAESDGR AGRAGEVIGA IGIVLFDQPE TTLQPLISKF ALLQRDLDDA RRELATQRNN PLYQHAADGQ RRSKYTFASF IGSSPAAVEV KRHARRAAQS ASPVLLLGET GTGKELLAHA IHAASARAKG QFVSVNIAAV PDTLLEAEFF GFAPGAFTGA DRRGREGKFK LADGGSLFLD EIGDMPLGLQ AKLLRALQEG EIEPLGSNKL VPFDARVIAA TSRDLPELVR RGQFREDLYY RLNVLPLRVP PLRERRSDIP ALVEALGEDM ALRSGEAPPE LTPDALALLA GQHWRGNIRE LRNVLEQVTM RSDSQRIDAA QLERILREAG LEQIELPATL QSAHDADEEA LLLRPLAQQV AELERKAIAA ALTATGGNKL ATSRLLGISR ATLYERMTNQ ERPA
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