| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2411 |
|---|
| Symbol | |
|---|
| ID | 7970455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2575688 |
|---|
| End bp | 2576920 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792994 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002944304 |
|---|
| Protein GI | 239815394 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.733291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA TCAAACGCTC CACCCTTGCC ATCGCGCTGC TGGCGCTGGT CGTCATCATC
GCCGCGGCCG TGTGGCTGAC CCGCAAGCCC GCGAACGAAG CCGGCACGCC GGCCGCCGCC
GCCAAGGGCA AGGCCGCCAC GCCCGCCTCC CGGCCGACGC TGACCGTGAC CGTGGCCAAA
CCCGAAGCCA CCGAGCTGAC CCTCACGCTC GCGGCCAACG GCAACGTGGC GGCCTGGCAG
GAGGCCAGCG TGGGCTCCGA GTCCAGCGGC CTCCGGCTTG CCGAGGTGCG CGTGAACGTG
GGCGACGTGG TCAAGAAGGG CCAGCTGCTG GCCGTGTTCT CGCCCGAGAC GGTGCGCGCG
GACATTGCGC AATCGCGCGC CTCGCTCGCC GAGGCCAGGG CCACCGCGGC CGATGCCGCG
GGCAACGCGG CGCGCGCCCG CACGCTGCAG GCCACCGGCG CACTGAGCCA GCAGCAGATC
AACCAGTACC AGACGGCCGA GCAGACCGCC AAGGCGCGCG TCGAGGCCGC CGAAGCCGTG
CTCGCGGCGC AGGAAGTGCG CGGCCGCAAC ACGCAGGTGC TGGCGCCCGA CGACGGCGTG
ATCTCCTCTC GCACCGCCAC GGTCGGCAGC GTGGTGGCCG CCGGCACCGA GCTGTTCCGC
CTGATCCGCC AGGGCCGGCT CGAATGGCGC GCCGAAGTCA CCTCGGCCGA GCTCAGCCGC
ATTGCCGTGG GCACCACCGC CTTCGTGGTG AGCGCGAGCG GCGCGCAGGT GCGCGGCAAG
GTGCGCAGCA TCGCGCCCAC GGTCGATCCG CAGACCCGCG CGGCGCTGGT CTATGTCGAC
CTGCCGAACG TGCAGCAGAA CACCGGCATC AAGGCCGGCA TGTTCGCGCG CGGCGAATTC
GAACTGGGGC GCAGCTCCGC ACCCACCGTG CCGCAGAGCT CCATCGTTCC GCGCGACGGC
TTCAACAACG TCTTCGTGCT GCAGCCCGAC AACCGCGTGG TGCAGTTGAA GGTGCAGACC
GGCCGCCGCG TCGGCGAGCG CGTGGAGATC ACCAGCGCGC TGCCCGAGGG CGCGCAGATC
GTGGTGCAGG GCGCAGGCTT TTTGAACGAC GGCGACCTGG TACGCGTGGT GGCGCCGCCG
GCGCCGGCAG CCGCAGGCGC CCGGCCCGCC GCAGCGCCGG CCTCGGCTGC CGCGGGTGGC
CAGGGCAACG GCGAAACGAG GGCACGCCCA TGA
|
|---|
| Protein sequence | MKRIKRSTLA IALLALVVII AAAVWLTRKP ANEAGTPAAA AKGKAATPAS RPTLTVTVAK
PEATELTLTL AANGNVAAWQ EASVGSESSG LRLAEVRVNV GDVVKKGQLL AVFSPETVRA
DIAQSRASLA EARATAADAA GNAARARTLQ ATGALSQQQI NQYQTAEQTA KARVEAAEAV
LAAQEVRGRN TQVLAPDDGV ISSRTATVGS VVAAGTELFR LIRQGRLEWR AEVTSAELSR
IAVGTTAFVV SASGAQVRGK VRSIAPTVDP QTRAALVYVD LPNVQQNTGI KAGMFARGEF
ELGRSSAPTV PQSSIVPRDG FNNVFVLQPD NRVVQLKVQT GRRVGERVEI TSALPEGAQI
VVQGAGFLND GDLVRVVAPP APAAAGARPA AAPASAAAGG QGNGETRARP
|
|---|
| |