| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2410 |
|---|
| Symbol | |
|---|
| ID | 7970454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2572581 |
|---|
| End bp | 2575691 |
|---|
| Gene Length | 3111 bp |
|---|
| Protein Length | 1036 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792993 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_002944303 |
|---|
| Protein GI | 239815393 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.904497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCT CCGCCTGGTC CATCCGCAAC CCGATTCCGG CGGTGATGCT GTTCGTGCTG
CTCTCCTTCG GCGGGCTGCT GTCCTTCAAC GCCATGAAGG TGCAGAACTT TCCGGACATC
GACCTGCCGA CCGTGACGGT CTCGGCCTCG CTGCCCGGCG CCGCGCCTTC GCAGCTGGAG
ACCGACGTCG CGCGCAAGCT CGAGAACTCC ATTGCCACGG TGCAGGGCCT CAAGCACATC
ACCACCAAGG TGCAGGACGG CGCCGCCACG CTGATCGTCG AGTTCCGCCT CGAGAAGCCG
GTGCAGGAAG CCGTGGACGA CGTGCGCTCC GCAGTGCAAC GCGTGCGCGC CGACCTGCCG
GCCGACGTGC GCGACCCGGT GGTCACCAAG CTCGACTTCG CGGCGCAGCC GGTGCTGGCC
TTCACCATCG CCTCGTCGCG CATGGACGCC GAGGCGCTGA GCTGGTTCGT GGACAACGAC
ATCACCAAGA AGCTGCTCGC GCTGCCCGGC GTGGGCGCAG TGAACCGCGT GGGCGGCGTC
ACGCGCCAGG TGCACGTCGA CCTCGATCCG GCCAAGCTGC AGGCGCTGGG CGCGTCGGCG
GCCGACATCT CGCGCCAGCT GCGCCAGGTG CAGACCGAAA GCGCGGGCGG CCGCATCGAC
CTGGGCGGCA GCGAGCAGCC GGTGCGCACC CTGGCCACCG TGCAGTCGGC CGACCAGCTG
GCCGACATGC AGATCGCGCT TTCCGACGGC CGCCGCATCC GGCTCGACCA GGTGGCGCGC
ATCAGCGACA CCATCGCCGA GCCGCGCGCC GCGGCGCTGC TCAACGGCAA GCCGGTGGTC
GGCTTCGAGG TGGCGCGCAG CCGCGGCGCG AGCGAGGTCG AGGTGGGCCG CGCGATCCAG
AAGGCGCTGG CCGAGCTGCG CGCGCAGCGC CCCGACATCG AGCTGACCGA GGCATTCAAT
TTCGTCGAGC CGGTGGAAGA AGAGTACGAA GGCTCGCTGC ACCTGCTGTA CGAGGGTGCG
ATCCTGGCCG TGATCGTGGT GTGGCTGTTC CTGCGCGACT GGCGCGCCAC TTTCGTCTCG
GCCGTGGCGC TGCCCATGTC CGTGATACCG GCCTTCATCG GCATGCACCT GCTGGGCTTT
TCGGTCAACG TGATCTCGCT GCTCGCGCTC TCGCTGGTGG TCGGCATATT GGTGGACGAT
GCCATCGTGG AAGTGGAGAA CATCGTGCGC CACCTGCGCA TGGGCAAGTC GCCCTACGAG
GCGGCCATGG AGGCGGCCGA CGAGATCGGG CTGGCGGTGA TCGCCACCAC CTTCACGCTG
ATCGCGGTGT TCCTGCCCAC CGCCTTCATG AGCGGCGTGG CCGGCAAGTT CTTCAAGCAG
TTCGGCTGGA CGGCCTCGCT GGCGGTGTTC GCTTCGCTGG TGGTGGCGCG GGTGCTCACA
CCGATGATGG CGGCCTACAT CCTCAAGCCC GTGGTGGGCG CCGAAAAGGA GCCGCGCTGG
CTCACGGCCT ACATGCGCGC CGTGGAATGG AGCACGCACC ACCGCTTCAA GACGATGGTG
CTCGCCACCC TGTTCTTCTT CGGTTCGCTG GCGATGATTC CGCTGCTGAA GACCGGCTTC
ATTCCGCCCG ACGACAACTC GCAGACGCAG ATCTACCTGT CGCTCGCGCC CGGCTCCACG
CTTGCGCAGA CCACCGCGGC CGCGGAGGAA ACGCGCCACC GCGTGATGAA GATCGACCAT
GTGCGCAGCG TCTACACCAC CGTGGCCGGC GGCAGCGCGG GCGGCGATCC GTTCGCCAAC
TTCGGCACGC CCGAGACGCG CAAGGCCACG CTCACCATCA AGCTCGACGA GCGCGGCGAC
CGGCCGCGCA AGCAGGTGAT CGAGAACCAG ATCCGCGCCG CGCTCGAAAC GCTGCCCGGC
GTGCGCAGCA CCGTGGGCCT GGGCGGCTCG GGCGAAAAAT ACATCCTCGC GCTCACGGGT
GAAGACCCCG CCGCGCTGGC CAGCGCCGCC AGCGCAGTCG AGAAAGACCT GCGCACGGTG
CCCGGCCTCG GCAACATCAC TTCCACCGCA AGCCTGATCC GCCCCGAGAT CGCCGTGCGC
CCCGACTTCG CGCGCGCCGC CGACCTGGGC GTGACCAGCT CGGCCATCGC CGAGACGCTG
CGCGTGGCCA CGCTGGGCGA CTACGACCAG GCGCTGGCCA AGCTCAACCT CGCGCAGCGG
CAGGTGCCCA TCGTGGTGAA GCTGGAGGAC TCGGCGCGGC AGAACCTCGA CCTGCTCGGC
CGCCTCTCGG TGCCCGGCGC GCGCGGCCCG GTCATGCTGA GCCAGGTGGC CTCGCTCACG
ATGGAAGGCG GCCCCGCCGT CATCGACCGC TACGACCGCT CGCGCAACGT CAACTTCGAG
ATCGAGCTGT CGGGCGTGGG CCTGGGCGAT GCCAAGACCG CGGTTACGGC GCTGCCCTCG
ATCCAGAAGC TGCCGCCCGG CGTGCGCGTG ACCGAAGTGG GCGACGCCGA GGTGATGACC
GAGCTGTTCA ACAGCTTCGG CCTTGCGATG CTGACAGGCG TGCTGTGCAT CTACATCGTG
CTGGTGCTGC TGTTCAAGGA CTTCCTGCAT CCGGTGACGA TCCTCTGCGC ACTGCCGCTG
GCGCTCGGCG GCGCCTTCGT GGGCCTCCTG ATCGGGCAGA AGGCGCTGTC GATGCCGTCG
CTGATCGGCC TGATCATGCT GATGGGCATT GCCACCAAGA ACTCGATCCT GCTGGTGGAA
TACGCCATCG TGGCGCGCCG CGACCACGGC ATGAGCCGCT GGGACGCGCT GCGCGACGCC
TGCCACAAGC GCGCGCGGCC CATCATCATG ACCACGCTGG CCATGGGCGC CGGCATGCTG
CCGATTGCGG TGGGCCTTGG CACCGCGGAT TCAAGCTTCC GCTCGCCGAT GGCGATGGCG
GTGATCGGCG GGTTGATCAC TTCCACGGTG CTGAGCCTGC TGGTGGTGCC GGCGGTGTTC
ACTTATGTGG ACGACATCGA GCACTGGATG CGGCGGACGG TGCGCAAGCT GCGGGGGCTG
CCGGCTGATC CGCATATTGA TGATGATCTG GTGGAGCGGA CGGCTGGTTG A
|
|---|
| Protein sequence | MNVSAWSIRN PIPAVMLFVL LSFGGLLSFN AMKVQNFPDI DLPTVTVSAS LPGAAPSQLE
TDVARKLENS IATVQGLKHI TTKVQDGAAT LIVEFRLEKP VQEAVDDVRS AVQRVRADLP
ADVRDPVVTK LDFAAQPVLA FTIASSRMDA EALSWFVDND ITKKLLALPG VGAVNRVGGV
TRQVHVDLDP AKLQALGASA ADISRQLRQV QTESAGGRID LGGSEQPVRT LATVQSADQL
ADMQIALSDG RRIRLDQVAR ISDTIAEPRA AALLNGKPVV GFEVARSRGA SEVEVGRAIQ
KALAELRAQR PDIELTEAFN FVEPVEEEYE GSLHLLYEGA ILAVIVVWLF LRDWRATFVS
AVALPMSVIP AFIGMHLLGF SVNVISLLAL SLVVGILVDD AIVEVENIVR HLRMGKSPYE
AAMEAADEIG LAVIATTFTL IAVFLPTAFM SGVAGKFFKQ FGWTASLAVF ASLVVARVLT
PMMAAYILKP VVGAEKEPRW LTAYMRAVEW STHHRFKTMV LATLFFFGSL AMIPLLKTGF
IPPDDNSQTQ IYLSLAPGST LAQTTAAAEE TRHRVMKIDH VRSVYTTVAG GSAGGDPFAN
FGTPETRKAT LTIKLDERGD RPRKQVIENQ IRAALETLPG VRSTVGLGGS GEKYILALTG
EDPAALASAA SAVEKDLRTV PGLGNITSTA SLIRPEIAVR PDFARAADLG VTSSAIAETL
RVATLGDYDQ ALAKLNLAQR QVPIVVKLED SARQNLDLLG RLSVPGARGP VMLSQVASLT
MEGGPAVIDR YDRSRNVNFE IELSGVGLGD AKTAVTALPS IQKLPPGVRV TEVGDAEVMT
ELFNSFGLAM LTGVLCIYIV LVLLFKDFLH PVTILCALPL ALGGAFVGLL IGQKALSMPS
LIGLIMLMGI ATKNSILLVE YAIVARRDHG MSRWDALRDA CHKRARPIIM TTLAMGAGML
PIAVGLGTAD SSFRSPMAMA VIGGLITSTV LSLLVVPAVF TYVDDIEHWM RRTVRKLRGL
PADPHIDDDL VERTAG
|
|---|
| |