| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2398 |
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| Symbol | |
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| ID | 7970442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2558922 |
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| End bp | 2560013 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644792981 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_002944291 |
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| Protein GI | 239815381 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTCC CATTCCAATC CGCCGCCATC CTCGGCGCGG GCCTCATGGG CCGGTTGCTC
GCGGTCACGC TGGCGCGGGC CGGCTGCAAG GTCGAGCTGT TCGAAGCGGG CAGCCCCGAA
GCCGAAGGCG CCGCCGCGCG CGTGGCGGCC GCCATGCTCG CGCCGCTGGC CGAATCGGCC
GTGGCGCCGG TGCCGCTCGT GCGCATGGGG CAGTACGCGC TGGGCCGCTG GCCCGAGTTG
CTGGCACCGC TGGCGCAGCC CGTGTTCTTC CAGCGCGAAG GCACGCTGGT GCTGTGGCAC
CGCCAGGACG CCGCCGAGGC CGCGCGGCTC GCGCGCGTGC TGGCGCGCAC CGGCACGCAG
GTGCCTGAGC TCGCCCCCAT GCGCACGCTC GACGGCAGCG GGATTGCCGC GCTCGAGCCG
TCGCTCGGCC AGCGCTTCGC GCAGGGTTTG TTCCTTCCGG GCGAAGGCCA GCTCGACAAC
CGCGCGCTGC TGGCTTCGCT GCTGGCCACG CTGCAGGCCA GCCCCGGGGT GAAGCTGCAT
TGGCAGTCGC CACGCACGCC TGGCGATTTT TCTCCGGGCA CGCCGGGCCA GCCCGACTGG
GTGATCGACT GCCGCGGCCT CGGCGCCAAG CCGCAGTGGA ACGCGCTGCG CGGCGTGCGC
GGCGAAGTCG TCCGCGTGCA TGCGCCCGAG GTGAGGCTGC AGCGGCCCAC GCGGCTGGTG
CATCCGCGCT ATCCGCTCTA CATCGCACCC AAGCCCGGCA GCGTGTTCGT GATCGGCGCG
ACCGAGATCG AATCCGACGA CATGTCGCCC GCCAGCGTGC GCTCCACGCT CGAGCTGCTG
AGCGCGGCCT ATGCGGTGCA CAGCGGCTTC GCCGAAGCCC GCATCCTCGA GATCGCGACC
CAATGCCGCC CCACGCTGCC CGACAACCTG CCCGCGATCC GCCAGCCGCA GCCGCGCGTG
CTGCAGATCA ACGGCCTGTA CCGCCACGGT TTCATGATTG CGCCCGCCGT GCTCGACGCC
GCCATGGAGC TGCTCGTGCA CGGCCGCTCT GCGCTCGCGC AGAAGCTCGG CCTGGAGACA
CCCGAAGCAT GA
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| Protein sequence | MSLPFQSAAI LGAGLMGRLL AVTLARAGCK VELFEAGSPE AEGAAARVAA AMLAPLAESA
VAPVPLVRMG QYALGRWPEL LAPLAQPVFF QREGTLVLWH RQDAAEAARL ARVLARTGTQ
VPELAPMRTL DGSGIAALEP SLGQRFAQGL FLPGEGQLDN RALLASLLAT LQASPGVKLH
WQSPRTPGDF SPGTPGQPDW VIDCRGLGAK PQWNALRGVR GEVVRVHAPE VRLQRPTRLV
HPRYPLYIAP KPGSVFVIGA TEIESDDMSP ASVRSTLELL SAAYAVHSGF AEARILEIAT
QCRPTLPDNL PAIRQPQPRV LQINGLYRHG FMIAPAVLDA AMELLVHGRS ALAQKLGLET
PEA
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