| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2394 |
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| Symbol | |
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| ID | 7970438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2554753 |
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| End bp | 2556942 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792977 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002944287 |
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| Protein GI | 239815377 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAAG CAATGACACA AAAGAAATTC CGATCCTGGC CGCTGACGCC GGTCTCTCGT
GCAGTAGCCA CCACCTTTCT TCTTCTGGCG GCCGGCGGCG CGCAAGCCCA GCAGCCAACC
GAGCAGTTGC CCGCCATCAC GGTGAACGAA AGCAGCGCCG CCCCGCAAGC CGAAGTGAGC
GGCTTCGGCG ACGTGCCGCT GCGCGAGCTG CCGCTCTCGG CCACGGTGAT CGACAGCACG
CAGCTTCGCA CGAGCGGCGC GCGCCGCCTC GCCGACCTCA CGCAGTTCGA TTCCTCGGTG
ACCGATGCCT ACAACTCGGC CGGCTACTGG GACTACCTCA CGGTGCGCGG CTTCGTGCTG
GACAACCGCT TCAACTACCG GCGCGAAGGC CTGCCGATCA GCGCCGAGAC ATCGATCCCG
CTCGACAACA AGGAGCGCAT CGAGATCCTG CGCGGCACCA GCGGCATCCA GGCCGGCACC
AGCGCGCCGG GCGGGCTGGT CAACTACGTG GTCAAGCGGC CCACCGAGCA GGACCTGCGC
ACGCTGCGCA TCGAAACCAC CAGCCGCGGC AGCGTGCTCG GCGCGCTCGA CCTGGGCGGG
CGCTTCGGTG CGAACCGCGA GTTCGGCTAC CGGCTCAACA TCGCGAGCGA AAACCTCAAG
CCGCTCGTGC ACAACCTCGA CGGCAACCGC AACCTGTTCT CGCTGGCGGG CGACTGGCGC
ATCACGCGCG ATTCGGTGCT CGAGTTCGAG ATCGAGCGCA GCCACAAGAC CCAGCCGAGC
CAGAACGGCT TCAGCCTGCT GGGCAGCACG CTGCCGGTGC CGGTCGATCC GAGGATCAAC
CTCAACAACC AGCCGTGGTC GCAGCCTTCG GAATTCAACG CGCTCACCGG CAGCGTGCGC
TTCAGCCAGG CGCTCAATGC CGACTGGCGC TGGAGCGCGC AGATCGGCCA GCAAAGGCTC
AAGACCGATG ACCGCCTGGC CTATGCCTTC GGCTTCGATT GCCACCCTGA AAGCAACTTC
TCTTACTGTG ATCGCTACGG CCCCGACGGC ACCTTCGACT TCTACGACTT CCGCAGCGAA
AACGAGCGGC GCACGCAAAC GGCCGGCAGC CTCAACCTCA AGGGCAACGT GACGGCCGGC
AGCGTGCGGC ACGAGCTCGG CTTCGGCCTG CTCGCGAGCC ACGTGCGCAA CCGCTTCCAG
GACCAGGCCT ACAACTACGT CGGCACCGGC AACGTGTGGG CCACGGCCGT GGTGCCGCCC
GACCCCACGC TGACCGACGC CAACACCAAC CGCGACGAGC GTTCCACCGA GCTCTCGGTG
CAGGACGCGA TCCGCTGGAA CAGCCGCTTC ACCACCTGGC TCGGCGTGCG CCACACGCGG
CTGGACCGCG ACAGCATCCG CACCGATGGC ACGCGCCCCA CCGGCTACAA GGACGGCATC
ACCACCCCAT GGATCGCCGC CAGCTTCGCC ATCCAGCCGG GCCTGCTGGC CTATGCGAGC
TGGGGCAAGG GCGTCGAGTC GCAGGTGGTG CCGAACAAGA GTTCGCAGTA CAACAACGCC
GGCGAGGCGC TGCCCGCGCT GACCTCGCGC CAGTGGGAGC TGGGCCTCAA GGGCGGAAGC
GACGTCTTCG CCTGGCAGCT CGCGTGGTTC GACATCAAGC GCCCGATGAC GAACCTCGAT
GCCTGCAACC GTCTCGGCAC CACACCCTGC GACGGACGCT ACGACGGCAG CGCCGTGCAC
CGCGGGCTCG AAGCGGGCGC ACAGTGGAAC ACGGGGCCCT GGCGCCTTGC AGGCAGCGTC
ACGCTGATCG ATGCCAAGCG CCGCGGAAGC ACCGCCGAGC CGGCCACCAA CGGCCAGTCG
CCCACCAACG TGCCCAAGCA GGTGCTGCGC GCGCAGGCCG GCTACCGCGT GGCTTCGGTG
CCGGGCCTCG AGTTGCTCGG ACAGCTCTCG CATGAAGGCC GGCGCAACGT GCTGCCCGAT
GGTTCGATCG CCCTGCCCTC ATGGACGCGC GTCGATGCCG TGCTGCGCTA CGACACCCGG
CTGCGCGGCG TGAACACGAG CTGGAGCATC GCCATCGACA ACCTGTTCGA TCGCCGCTAC
TGGAAGGAAT CGCCCTACCA GTTCGGCCAC GTCTATCTCT TTCCAGGTGC ACCGCGCACG
CTGCGCCTGG GCTTGAGCGT GTCGCTCTGA
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| Protein sequence | MNEAMTQKKF RSWPLTPVSR AVATTFLLLA AGGAQAQQPT EQLPAITVNE SSAAPQAEVS
GFGDVPLREL PLSATVIDST QLRTSGARRL ADLTQFDSSV TDAYNSAGYW DYLTVRGFVL
DNRFNYRREG LPISAETSIP LDNKERIEIL RGTSGIQAGT SAPGGLVNYV VKRPTEQDLR
TLRIETTSRG SVLGALDLGG RFGANREFGY RLNIASENLK PLVHNLDGNR NLFSLAGDWR
ITRDSVLEFE IERSHKTQPS QNGFSLLGST LPVPVDPRIN LNNQPWSQPS EFNALTGSVR
FSQALNADWR WSAQIGQQRL KTDDRLAYAF GFDCHPESNF SYCDRYGPDG TFDFYDFRSE
NERRTQTAGS LNLKGNVTAG SVRHELGFGL LASHVRNRFQ DQAYNYVGTG NVWATAVVPP
DPTLTDANTN RDERSTELSV QDAIRWNSRF TTWLGVRHTR LDRDSIRTDG TRPTGYKDGI
TTPWIAASFA IQPGLLAYAS WGKGVESQVV PNKSSQYNNA GEALPALTSR QWELGLKGGS
DVFAWQLAWF DIKRPMTNLD ACNRLGTTPC DGRYDGSAVH RGLEAGAQWN TGPWRLAGSV
TLIDAKRRGS TAEPATNGQS PTNVPKQVLR AQAGYRVASV PGLELLGQLS HEGRRNVLPD
GSIALPSWTR VDAVLRYDTR LRGVNTSWSI AIDNLFDRRY WKESPYQFGH VYLFPGAPRT
LRLGLSVSL
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