| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2384 |
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| Symbol | |
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| ID | 7970427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2547982 |
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| End bp | 2548641 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792966 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002944277 |
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| Protein GI | 239815367 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.23421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACTCC TGCTTCTCGA AGACGACGTG ATGATCGGCG AGGCCGTGCT CGACCTGCTG
CGCGCCGAGC AGTACGCGGT GGACTGGGTG AAGGATGGCG AGGCGGCCGA ATCCGCATTG
CGCACCCAGC AGTACGACCT CGTGCTGCTC GACCTGGGCG TGCCGCGCCG CGACGGGCTT
GAAGTGCTGC GCAGCCTGCG CGCCCGCAAG CAGCGCATGC CGGTGCTGAT TGCCACGGCA
CGCGACTCGG TGCAGCAGCG CATCGAAGGG CTCGACGCGG GCGCCGACGA CTACGTGCTC
AAGCCCTACG ATCTCGACGA GCTGCTGGCG CGCATCCGCG CCCTGCTGCG CCGCGCCGCG
GGGCGCGCCG AGCCGGTGTA CGAGCACATG GGCGTGAGCA TCAACCCGGC CACGCGCGAG
GTCGCGGTGG AGGGCCAGCC GGTGGTGCTT TCGGCGCGCG AATGGGCCGT GCTCGAACCG
CTGATCGCGC GGCCCGGCAT GGTGCTGTCG CGCGCCCAGC TCGAGGAAAA GCTCTACAGC
TGGAAGGACG AGATCAGCAG CAATGCGGTC GAGGTCTACG TGCACGGCCT GCGCAAGAAA
CTCGGCGCCG AACTGATCCG CAACGTGCGG GGCGTCGGCT ACATGGTGCC GAAGGCATGA
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| Protein sequence | MRLLLLEDDV MIGEAVLDLL RAEQYAVDWV KDGEAAESAL RTQQYDLVLL DLGVPRRDGL
EVLRSLRARK QRMPVLIATA RDSVQQRIEG LDAGADDYVL KPYDLDELLA RIRALLRRAA
GRAEPVYEHM GVSINPATRE VAVEGQPVVL SAREWAVLEP LIARPGMVLS RAQLEEKLYS
WKDEISSNAV EVYVHGLRKK LGAELIRNVR GVGYMVPKA
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