| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2383 |
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| Symbol | |
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| ID | 7970426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2547157 |
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| End bp | 2547927 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792965 |
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| Product | transcriptional regulator, IclR family |
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| Protein accession | YP_002944276 |
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| Protein GI | 239815366 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.151168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG CCAAGGCCGA CTTCATCGAG GGCATCGCCA AGGGAATGGC GGTGCTCGAA
AGCTTCGACA CCGAGCGCCA GCGCCTCAAC GCCACGCTGG CCGCCGAGCG CGCCGGCCTC
ACGCGCGCCG CCGCGCGCCG GCACCTGCTC ACGCTGGCCC ACCTGGGCTA CCTGGAGACC
GATGGCAGCT ATTTCTGGAT GGCACCCAAG GTGCTGCGCT TCTCGGGCAG CTACCTGGCC
TCGTCGCGGC TGCCGCGCGC GCTGCAGCCC ACGCTGAACC GGCTGGCGGC GCAGACCGGT
GAATCGTTCT CGGCCGTGGT GCTCGACGGC GAAGAGGCGG TCATCATTGC GCGCAGCGGC
GCCTACGGCA CGCCGACGCG CGTGCTGGCC TATGGCCTGC ACCTTGGCGC GCGCCTGCCG
GCCCATGCCA CCTCGACCGG ACGGGTGCTG CTCGCGGCCA TGGCGCCGGC CCAGTTCACG
CAGTGGCTCA AGGGACGCCA CCTCGCGCGG CTCACGCCGC ACACCACCAC CCAGGCGCGC
GGCCTGCGCC AGCTGATTTC CCGCGTGCGC AAGGACGACT ACTGCTTTGC CAGCGAAGAG
CACGAACTCG GCGTGCAGGC GCTCGCGGTG CCGCTGCGCG ACATGCAGGG CCGCACCGTG
GCCGCGCTCA ACGTGGTGCT GTCGGGCACG CGCTACCAGG AAGAGACGCT CCAGCGCGAG
ATGCTGCCGC TGCTCTTCGA GGCGGCGCGC GAAGTGCGCT CGCTGCTGTG A
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| Protein sequence | MTIAKADFIE GIAKGMAVLE SFDTERQRLN ATLAAERAGL TRAAARRHLL TLAHLGYLET
DGSYFWMAPK VLRFSGSYLA SSRLPRALQP TLNRLAAQTG ESFSAVVLDG EEAVIIARSG
AYGTPTRVLA YGLHLGARLP AHATSTGRVL LAAMAPAQFT QWLKGRHLAR LTPHTTTQAR
GLRQLISRVR KDDYCFASEE HELGVQALAV PLRDMQGRTV AALNVVLSGT RYQEETLQRE
MLPLLFEAAR EVRSLL
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