| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2374 |
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| Symbol | |
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| ID | 7970417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2536604 |
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| End bp | 2538142 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644792956 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_002944267 |
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| Protein GI | 239815357 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0492807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACC AACTCATTAT TTTCGACACC ACCTTGCGCG ACGGCGAGCA GTCGCCCGGC
GCCTCGATGA CGCGCGACGA GAAGATGCGC ATCGCCAAGC AGCTCGAGCG GCTCAAGGTC
GACGTCATCG AAGCGGGCTT TCCAGCCAGT TCGAACGGCG ACTTCGAGGC CGTCAAGGCG
ATCGCCGACA TCATCAAGGA ATCGACCGTG TGCGGCCTGT CGCGCGCCAA CGACCGCGAC
ATCTCGCGCG CCGCCGAGGC GCTCAAGGGC GCGGCGCGCG GGCGCATCCA CACCTTCATC
GCGACTTCGC CGCTGCACAT GGAAAAGAAG CTGCGCATGT CGCCCGACGA AGTGCACGAG
CAGGCGAAGC TTGCCGTGCG CTTTGCGCGC AACCTCGTGT CCGACGTGGA GTTCAGCCCC
GAGGACGGCT ACCGCAGCGA TCCCGACTTT CTCTGCCGCG TGCTGGAGAC CGTGATCAAC
GAGGGCGCCA CCACCATCAA CGTGCCCGAC ACCGTGGGCT ACGCCATTCC CGAGCTCTAC
GGCAACTTCA TCAAGATGCT GCGCGAGCGC GTTCCCAATA GCGACAAGGC GATCTGGTCG
GTGCATTGCC ACAACGACCT TGGCATGGCC GTGGCCAACT CGCTGGCGGG CGTGAAGATC
GGCGGCGCGC GCCAGGTCGA ATGCACGATC AACGGCCTGG GCGAGCGTGC GGGCAACTGC
TCGCTCGAAG AGGTGGTGAT GGCGGTCAAG ACGCGCAGGG ACTACTTCGG ACTGGACCTC
AACATCGACA CCACGCACAT CGTGGCTGCG AGCCGCATGG TGAGCCAGAC CACCGGCTTC
GTGGTGCAGC CCAACAAGGC CGTGGTGGGC GCCAACGCCT TCGCGCACGC CTCGGGCATT
CACCAGGACG GCGTGCTCAA GGCCCGCGAC ACCTACGAGA TCATGCGGGC CGAGGACGTG
GGCTGGGCCG CCAACAAGAT CGTGCTGGGC AAGCTCAGCG GGCGCAATGC ATTCAAGCAG
CGGCTGCAGG AACTGGGCGT GACCATGGCC AGCGAAGCCG ACATTAACGC CGCCTTCTTG
CGCTTCAAGG AACTGGCGGA CCGCAAGTCC GAAATTTTCG ACGAGGACAT CCTCGCGCTC
GTCAGCGCTG AAGAGCACTC GAACGTTGAC GAACAGTTTG CTTTTGTCTC GCTCTCGCAG
CACAGTGAAA CCGGTGAACG TCCCCAGGCC AAGGTTGTCT TCACCGTCCA GGGCAAGGAA
GTCACTGGTG AATCCGATGG CAATGGCCCG GTCGATGCTT CTCTCAAGGC CATCGAATCG
CATGTCAAGA GCGGCGCCGA AATGGTGCTT TACTCGGTGA ATGCGATCAG TGGCTCGACA
GAAAGCCAAG GAGAAGTTAC AGTTCGGTTA CAAAATGCGG GGCGGGTGGT CAACGGTGTC
GGGGCAGATC CAGACATCGT GGTCGCGTCG GCAAAGGCTT ATTTGAGTGC GCTCAACAAG
TTACAGAGCC AAGCTGAGAA AGTGGCGGCA CAAGGTTAG
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| Protein sequence | MTDQLIIFDT TLRDGEQSPG ASMTRDEKMR IAKQLERLKV DVIEAGFPAS SNGDFEAVKA
IADIIKESTV CGLSRANDRD ISRAAEALKG AARGRIHTFI ATSPLHMEKK LRMSPDEVHE
QAKLAVRFAR NLVSDVEFSP EDGYRSDPDF LCRVLETVIN EGATTINVPD TVGYAIPELY
GNFIKMLRER VPNSDKAIWS VHCHNDLGMA VANSLAGVKI GGARQVECTI NGLGERAGNC
SLEEVVMAVK TRRDYFGLDL NIDTTHIVAA SRMVSQTTGF VVQPNKAVVG ANAFAHASGI
HQDGVLKARD TYEIMRAEDV GWAANKIVLG KLSGRNAFKQ RLQELGVTMA SEADINAAFL
RFKELADRKS EIFDEDILAL VSAEEHSNVD EQFAFVSLSQ HSETGERPQA KVVFTVQGKE
VTGESDGNGP VDASLKAIES HVKSGAEMVL YSVNAISGST ESQGEVTVRL QNAGRVVNGV
GADPDIVVAS AKAYLSALNK LQSQAEKVAA QG
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