Gene Vapar_2355 details

Gene Information

• Locus tag: Vapar_2355
• ID: 7970398
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2518444
• End bp: 2519058
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644792937
• Product: transcriptional regulator, TetR family
• Protein accession: YP_002944248
• Protein GI: 239815338

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.284642
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATCG CGACTGAAAA ACCAGCCCTT GAGGCCGCCT CCGCAGAGCC GGCCCACGAG 
CACTACGCCC GGCTGCTGGA AGGCATGGCG CGCGCCGTGG CCGCCAAGGG CTACGCGGAC 
ACCACCATTG CCGACATCGT GCGCGAGGCC GCCGTGTCGC GCCGCACCTT CTACGAGCAT 
TTCACGACCA AGTCGGAGTG CCTGATCGCG CTGTACGAGG CAGCCAGCAA GCTGGCGCTG 
CGCGCGGTGA GCGAAGCCTT CGATCCGGCC CAGCCCTGGC ATGCGCAGGT GGAGCGGGCG 
ATCACCGCGT ATTTCGACTA CCTTGCGCAG GATCCGGCGC TGCTGCGCAC ACTGTTCGTC 
GAGATCCTCG GCCTGGGCAT GCCGGGGCTG GCGGCGCGGC GCCGGGTGAA CGGCGAAATC 
GCCGGCTTCA TCCAGGCGGC CATCAACAAC GGCCCCGCGG CGCACCTGAC GAGCGAAATG 
GCGATGACCG TGGTGGGCGG CATCAACGAA CTGGTGCTGC AGGCCATCGA ACAGGACCGG 
GTGGGTGAGC TCGGCCAGCT GGTGCCGCCG GCCACGCGCC TGGTGCGCGC GGTGGCGGCG 
GAGAGCGCCA GGTAG 

 

Protein sequence

MSIATEKPAL EAASAEPAHE HYARLLEGMA RAVAAKGYAD TTIADIVREA AVSRRTFYEH 
FTTKSECLIA LYEAASKLAL RAVSEAFDPA QPWHAQVERA ITAYFDYLAQ DPALLRTLFV 
EILGLGMPGL AARRRVNGEI AGFIQAAINN GPAAHLTSEM AMTVVGGINE LVLQAIEQDR 
VGELGQLVPP ATRLVRAVAA ESAR