Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2340 |
Symbol | rnhA |
ID | 7971198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2504201 |
End bp | 2504650 |
Gene Length | 450 bp |
Protein Length | 149 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644792922 |
Product | ribonuclease H |
Protein accession | YP_002944233 |
Protein GI | 239815323 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0328] Ribonuclease HI |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.467837 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAACGAAG TCGTGATCTA CACCGATGGT GCGTGCAAAG GCAATCCCGG CCCTGGCGGC TGGGGCGCGT GGCTCAAGTC GGGCGCCACC GAAAAGGAAC TGTTCGGCGG CGAACTCAAC ACCACCAACA ACCGGATGGA GCTCACCGCC GTGATCGAGG GCCTGGCCGC GCTCAAGCGG CCCTGCAAGG TCATCCTCTA CCTGGACAGC CAGTACGTGC GCATGGGCAT CACCGAATGG ATCCGCGGCT GGAAGGCCAA GGGCTGGCGC ACCTCGACCA AGCAGCCGGT CAAGAACGTC GAGCTCTGGC AGAAACTCGA CAAGCTGGTG GCCGAAGGAG GCCACGTGAT CGAATGGCGC TGGGTCAAGG GCCACTCGGG CGACGTCGGC AACGAGCGTG CCGACATGCT GGCCAACAAG GGCGTGGACA AGGCGCTGGG CCGGATCTGA
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Protein sequence | MNEVVIYTDG ACKGNPGPGG WGAWLKSGAT EKELFGGELN TTNNRMELTA VIEGLAALKR PCKVILYLDS QYVRMGITEW IRGWKAKGWR TSTKQPVKNV ELWQKLDKLV AEGGHVIEWR WVKGHSGDVG NERADMLANK GVDKALGRI
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