Gene Vapar_2322 details

Gene Information

• Locus tag: Vapar_2322
• Symbol: rho
• ID: 7971179
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 2482188
• End bp: 2483453
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644792904
• Product: transcription termination factor Rho
• Protein accession: YP_002944215
• Protein GI: 239815305
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACTTAA ACGAACTCAA GGCACTCCAC GTGTCTGAAG TCCTCAAGCA GGCTGAAGCG 
CTTGAGATCG AAAACGTCGG CCGCATGCGC AAGCAGGAGC TGATGTTCGC GATCATCAAG 
AAGCGCGCCA AGGCCGGCGA ACAGGTCTTT GCCGACGGCG TGCTCGAAAT CCTGCCCGAC 
GGCTTCGGCT TCCTGCGCAG CCCCGACACC AGCTTCACGG CCAGCACCGA CGACATCTAC 
ATCTCGCCGA GCCAGGTGCG CCGCTTCAAC CTGCACACCG GCGACATGAT CGAAGGCGAA 
GTGCGCACGC CCAAGGACGG CGAGCGCTAC TTTGCGCTGA CCAAGCTCGA CAAGGTCAAC 
GACGGTCCGC CCGAGCAGAA CAAGCACAAG GTGATGTTCG AGAACCTGAC GCCGCTGTTC 
CCCAAGGAGC AGATGAAGCT GGAGCGCGAC GGCATCAAGA GCGACGAGAA CATCACGGGC 
CGGATCATCG ACATCATCGC CCCCATCGGC AAGGGCCAGC GCGCCCTGCT GGTGGCGCCG 
CCCAAGAGCG GCAAGACGGT GATGATGCAG CACATCGCCC ACGCGATCAG CGCCAACTAC 
CCCGAAGTGC ACATGATGGT GCTGCTGGTG GACGAGCGGC CCGAAGAAGT GACCGAAATG 
CAGCGCACCG TGAAGGGCGA GGTCATTGCC TCGACCTTCG ACGAGCCCGC CGCGCGCCAC 
GTGCACGTGG CCGAAATGGT GATCGAGCGC GCCAAGCGCC TGGTCGAGCT CAAGAAGGAC 
GTGGTGATCC TGCTCGACTC GATCACCCGC CTCGCCCGCG CCTACAACAA CGTCGTGCCC 
TCGTCGGGCA AGGTGCTCAC GGGCGGTGTC GACTCCAACG CGCTGCAGCG CCCCAAGCGC 
TTCCTGGGCG CCGCGCGCAA CGTCGAGGAA GGCGGCTCGC TGACCATCAT CGGCACCGCG 
CTGATCGACA CCGGCAGCCG CATGGACGAA GTGATCTTCG AAGAGTTCAA GGGCACCGGC 
AACTCCGAAA TCCACCTGGA CCGCCGCCTG TACGAAAAGC GCGTGTTCCC CTCGATCCAG 
CTCAACCGCA GCGGCACGCG CCGCGAAGAG CTGCTGCTGG CGCCCGAGAT CCTGCAGAAG 
ACCCGCATCC TGCGCCAGCT CATGTACAAC ATGGACGAGA TCGAGTCGAT GGAGCTCATG 
CTCAAGAACA TGAAGGCGAC GAAAACGAAT GTCGAATTCT TCGACATGAT GCGTCGCGGA 
GGCTGA 

 

Protein sequence

MHLNELKALH VSEVLKQAEA LEIENVGRMR KQELMFAIIK KRAKAGEQVF ADGVLEILPD 
GFGFLRSPDT SFTASTDDIY ISPSQVRRFN LHTGDMIEGE VRTPKDGERY FALTKLDKVN 
DGPPEQNKHK VMFENLTPLF PKEQMKLERD GIKSDENITG RIIDIIAPIG KGQRALLVAP 
PKSGKTVMMQ HIAHAISANY PEVHMMVLLV DERPEEVTEM QRTVKGEVIA STFDEPAARH 
VHVAEMVIER AKRLVELKKD VVILLDSITR LARAYNNVVP SSGKVLTGGV DSNALQRPKR 
FLGAARNVEE GGSLTIIGTA LIDTGSRMDE VIFEEFKGTG NSEIHLDRRL YEKRVFPSIQ 
LNRSGTRREE LLLAPEILQK TRILRQLMYN MDEIESMELM LKNMKATKTN VEFFDMMRRG 
G