Gene Vapar_2319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2319 
Symbol 
ID7971176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2478821 
End bp2480548 
Gene Length1728 bp 
Protein Length575 aa 
Translation table11 
GC content71% 
IMG OID644792901 
Productputative inner membrane transmembrane protein 
Protein accessionYP_002944212 
Protein GI239815302 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATCAGC CCACTCCCGC GATCGTTGCC CAGAGCGCCG TGCGCCGGCT GCCGCGCCTG 
GCACTGCTGC TGCTGTGCGC CGCCTACCTG CTGCCGGGCC TGGTGGGGCG CGGCCCCTGG
AAAAGCGCCG ACATCACCTC CTTCGGCTAC ATGGCCGAAC TGGCGCGCAA CACCGAAGGC
ATCGCCCGCT GGTTCGATCC CCTGCTGCTG GGCCTGCGCC CTGAAACCCC GGCGCTGCTT
CCCTACTGGA TCGGCGCCTG GGCCATCAAG ATCGCGCCCT CCTGGGTGAA CCCCGACCTG
GCGGTGCGCA TCGTCTTTGC GCTGCTGCTC TGGGGCACTT TCACCGCCAC CTGGTACGCC
GTCTACTACC TCGCGCGCAC CTCGCGGGCC CAGCCGGTGG CCTTCGCCTT CGGCGGCGAA
GCGCGGCCCA CCGACTACGC CCGCGCCATT GCCGATGGCG GATTGCTGGC GCTGATCGCC
TGCCTGGGCC TGGCCCAGTT GGGCCATGAA ACCACGCCGG CGCTGGCGCA GCTGTATTTC
GCGTCGCATC TGTTCTATGG CGTGGCGGCA TTGCCTTATC GCCGCACCGG GCCAGTCATT
GCACTGCTGG TCGGCACCAT CGGCATGACC CTGAGCGGCG GTCCCACGGT CGGCCTCGCG
CTGGCGGTGG GCAGCGCGCT GTTCATCGCC TACGAGCGGC GCACCGCCAG TGCCGATTCC
GACGAAAGCC CCGGCTACAC CCGCGGTGCG CTCGCCACGA TGAGCGCGGT GGCGCTGGTG
GCCGCGGCAC TGGCGCTCGG GCTCGGCCTG CTGCAATGGA AGATCCAGCT GCCGGGCCAT
CATCCGAGCA GCACCTCGGT GCTGGGCGAC GTGCGCAGCC AGGCCAAGCT GCTGGTGTGG
TTCACCTGGC CGGTCTGGCC GCTCGCGATC TGGACGCTGT GGCGCTGGCG CCGCCAGCTC
ACCGCGCGCC ATGTGGCGCT GCCGTTCTGG TTTGCGCTGG TGCCGCTGGC CGCGACCTGG
ACCACCGACT ATTCCGACCG CTCGCTGCTG CTCGCGCTGC CCGCACTCGC GACGCTGGCC
GCCTTTGCCC TGCCGACGTT CCGGCGCAGC GCGGCGGCGC TGATCGACTG GTTCAACGTG
CTGTTCTTCA GCGGACTGGC CGTGCTCGGA TGGATCTACT GGATCGCGAT GCAGACCGGC
GTGCCGACCA AGCCGGCCGC CAGCGTGGCA CGGCTGGTGC CCGGGTTCGT GCCAGGGTTC
TCGCCCACCG CATTCGCGCT GGCGCTGGCC GCCACCATCA CCTGGTGCTG GGTGGTGCGC
TGGCGCACCG GGCGCCACCG CGCGGCGCTC TGGAAAACGC TGGTGCTGCC GGCCGGCGGC
ACCGCGCTGT GCTGGATGCT GCTGATGACG CTGTGGCTGC CTCCGATCGA CTACGCGCGC
AGCTACGCGC CTCAGGTGCG GGCGGTGGCC GAGCGGGTCG GGCAGCCGAG CTGCATCGCC
GAGCTTGCGC TGAGCCGCGC GCACATCGCG GCGCTGCGGC ATCACGGCCA GTTCAACCTG
CAGCCGCTGC TGCTCGGCAC CGATTGCCCC TGGCTGCTGG TCAGCCCCGA AACCATCGAG
CGGCTGCACA CCATCATCCG CCTGGAGCAC TGGCGTTTCA GCGGTACCCT GCGGCGGCCC
AGCAGCGCGA GCGACGACCT GCTGCTCTAC CAGAAGATTG CGCCCTAG
 
Protein sequence
MNQPTPAIVA QSAVRRLPRL ALLLLCAAYL LPGLVGRGPW KSADITSFGY MAELARNTEG 
IARWFDPLLL GLRPETPALL PYWIGAWAIK IAPSWVNPDL AVRIVFALLL WGTFTATWYA
VYYLARTSRA QPVAFAFGGE ARPTDYARAI ADGGLLALIA CLGLAQLGHE TTPALAQLYF
ASHLFYGVAA LPYRRTGPVI ALLVGTIGMT LSGGPTVGLA LAVGSALFIA YERRTASADS
DESPGYTRGA LATMSAVALV AAALALGLGL LQWKIQLPGH HPSSTSVLGD VRSQAKLLVW
FTWPVWPLAI WTLWRWRRQL TARHVALPFW FALVPLAATW TTDYSDRSLL LALPALATLA
AFALPTFRRS AAALIDWFNV LFFSGLAVLG WIYWIAMQTG VPTKPAASVA RLVPGFVPGF
SPTAFALALA ATITWCWVVR WRTGRHRAAL WKTLVLPAGG TALCWMLLMT LWLPPIDYAR
SYAPQVRAVA ERVGQPSCIA ELALSRAHIA ALRHHGQFNL QPLLLGTDCP WLLVSPETIE
RLHTIIRLEH WRFSGTLRRP SSASDDLLLY QKIAP