Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2319 |
Symbol | |
ID | 7971176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2478821 |
End bp | 2480548 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644792901 |
Product | putative inner membrane transmembrane protein |
Protein accession | YP_002944212 |
Protein GI | 239815302 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATCAGC CCACTCCCGC GATCGTTGCC CAGAGCGCCG TGCGCCGGCT GCCGCGCCTG GCACTGCTGC TGCTGTGCGC CGCCTACCTG CTGCCGGGCC TGGTGGGGCG CGGCCCCTGG AAAAGCGCCG ACATCACCTC CTTCGGCTAC ATGGCCGAAC TGGCGCGCAA CACCGAAGGC ATCGCCCGCT GGTTCGATCC CCTGCTGCTG GGCCTGCGCC CTGAAACCCC GGCGCTGCTT CCCTACTGGA TCGGCGCCTG GGCCATCAAG ATCGCGCCCT CCTGGGTGAA CCCCGACCTG GCGGTGCGCA TCGTCTTTGC GCTGCTGCTC TGGGGCACTT TCACCGCCAC CTGGTACGCC GTCTACTACC TCGCGCGCAC CTCGCGGGCC CAGCCGGTGG CCTTCGCCTT CGGCGGCGAA GCGCGGCCCA CCGACTACGC CCGCGCCATT GCCGATGGCG GATTGCTGGC GCTGATCGCC TGCCTGGGCC TGGCCCAGTT GGGCCATGAA ACCACGCCGG CGCTGGCGCA GCTGTATTTC GCGTCGCATC TGTTCTATGG CGTGGCGGCA TTGCCTTATC GCCGCACCGG GCCAGTCATT GCACTGCTGG TCGGCACCAT CGGCATGACC CTGAGCGGCG GTCCCACGGT CGGCCTCGCG CTGGCGGTGG GCAGCGCGCT GTTCATCGCC TACGAGCGGC GCACCGCCAG TGCCGATTCC GACGAAAGCC CCGGCTACAC CCGCGGTGCG CTCGCCACGA TGAGCGCGGT GGCGCTGGTG GCCGCGGCAC TGGCGCTCGG GCTCGGCCTG CTGCAATGGA AGATCCAGCT GCCGGGCCAT CATCCGAGCA GCACCTCGGT GCTGGGCGAC GTGCGCAGCC AGGCCAAGCT GCTGGTGTGG TTCACCTGGC CGGTCTGGCC GCTCGCGATC TGGACGCTGT GGCGCTGGCG CCGCCAGCTC ACCGCGCGCC ATGTGGCGCT GCCGTTCTGG TTTGCGCTGG TGCCGCTGGC CGCGACCTGG ACCACCGACT ATTCCGACCG CTCGCTGCTG CTCGCGCTGC CCGCACTCGC GACGCTGGCC GCCTTTGCCC TGCCGACGTT CCGGCGCAGC GCGGCGGCGC TGATCGACTG GTTCAACGTG CTGTTCTTCA GCGGACTGGC CGTGCTCGGA TGGATCTACT GGATCGCGAT GCAGACCGGC GTGCCGACCA AGCCGGCCGC CAGCGTGGCA CGGCTGGTGC CCGGGTTCGT GCCAGGGTTC TCGCCCACCG CATTCGCGCT GGCGCTGGCC GCCACCATCA CCTGGTGCTG GGTGGTGCGC TGGCGCACCG GGCGCCACCG CGCGGCGCTC TGGAAAACGC TGGTGCTGCC GGCCGGCGGC ACCGCGCTGT GCTGGATGCT GCTGATGACG CTGTGGCTGC CTCCGATCGA CTACGCGCGC AGCTACGCGC CTCAGGTGCG GGCGGTGGCC GAGCGGGTCG GGCAGCCGAG CTGCATCGCC GAGCTTGCGC TGAGCCGCGC GCACATCGCG GCGCTGCGGC ATCACGGCCA GTTCAACCTG CAGCCGCTGC TGCTCGGCAC CGATTGCCCC TGGCTGCTGG TCAGCCCCGA AACCATCGAG CGGCTGCACA CCATCATCCG CCTGGAGCAC TGGCGTTTCA GCGGTACCCT GCGGCGGCCC AGCAGCGCGA GCGACGACCT GCTGCTCTAC CAGAAGATTG CGCCCTAG
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Protein sequence | MNQPTPAIVA QSAVRRLPRL ALLLLCAAYL LPGLVGRGPW KSADITSFGY MAELARNTEG IARWFDPLLL GLRPETPALL PYWIGAWAIK IAPSWVNPDL AVRIVFALLL WGTFTATWYA VYYLARTSRA QPVAFAFGGE ARPTDYARAI ADGGLLALIA CLGLAQLGHE TTPALAQLYF ASHLFYGVAA LPYRRTGPVI ALLVGTIGMT LSGGPTVGLA LAVGSALFIA YERRTASADS DESPGYTRGA LATMSAVALV AAALALGLGL LQWKIQLPGH HPSSTSVLGD VRSQAKLLVW FTWPVWPLAI WTLWRWRRQL TARHVALPFW FALVPLAATW TTDYSDRSLL LALPALATLA AFALPTFRRS AAALIDWFNV LFFSGLAVLG WIYWIAMQTG VPTKPAASVA RLVPGFVPGF SPTAFALALA ATITWCWVVR WRTGRHRAAL WKTLVLPAGG TALCWMLLMT LWLPPIDYAR SYAPQVRAVA ERVGQPSCIA ELALSRAHIA ALRHHGQFNL QPLLLGTDCP WLLVSPETIE RLHTIIRLEH WRFSGTLRRP SSASDDLLLY QKIAP
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