| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2318 |
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| Symbol | |
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| ID | 7971175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2477474 |
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| End bp | 2478817 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792900 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_002944211 |
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| Protein GI | 239815301 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCGGCG AACGAGGCCT GATTGCGCGG CACGCCGGCA CGGTGCTGGT GGGCCAGCTG
GCCGTGATGG CGTTCGGCGT GACCGACACC ATCGTGGCCG GCCGCTATTC CGAGAACGCG
CTCGCCGCGC TGTCGGTGGG CGCGGCCGTC TTCATCAGCG TGTTCGTCTC GCTGATGGGC
GTGCTGCAGG CGCTGCTGCC GGTCTGGGCG GAGCTGCACG GCGCGGACCG CAGAAGCGAA
GTCGGCCGCT CCGTGCGGCA GTCGCTCTAC CTGGCTGCCA TCGCGATTGC GGTCGGCATG
GCCGTGCTGC TGCTGCCGGG CGCGGTGCTG CGCTGGACCC AGGTGCCGCC CGCGATGCGC
GGCGAAGTGG AAACCTATCT GGGGGTGCTC GCCTTCGCAT TGCCGCCGGC CCTGCTGTTC
CGCCTGTTCA GCACCTTGAA CCAGAGCCTG GGCAAGCCGC AGGTGGTGAC CTGGCTCCAG
CTGGGCTCGC TGTGCGTGAA GCTGCCGCTG TCGATCTGGT TCGCCTTCGG CGGCGCCGGC
CTGCCGGCCA TGGGCCTGGT GGGCTGCGCC TGGGCCACGC TGTGCGTGAA CTGGGCCATG
CTGGCCTGCG CCGTGTGGCT GCTGCGCAGC AGCACCTTCT ACCGCGACTA CCGGCTCTGG
GAACGCATCG AAGCGCCCGA CTGGCGGCAG ATCCGCCAGT TCGCGAGCCT GGGCATTCCC
GGCGGCCTGG CCGTGCTGGT GGAAGTGACC TCGTTCACCC TGATGGCGCT GTTCATTGCG
CGCCTGGGCA CCGCCGCCGC CGCCGCGCAC CAGATCGCCT CGAACCTGCT GGCGGTGGCC
TACATGGTGC CGCTCTCGCT GGCCATTGCC ACCAGCGCGC GCGTGAGCTT CTGGCTCGGC
GCCGGAAAGG CCGCCAAGGC CCGCCGCGCC TGCCGCCTGG GCTTCGAGCT CACTGCCCTT
TGCGCGCTGT TCTTCGCGGG CGCCATGGTG GCGCTGCGCT TCAGGCTGGC CCACGTGTAT
TCCGACAATC CGGCCGTCAT CGCAGTGGCC GCGGCGCTGC TGCTGGTGGT GGCGGCCTAT
CACTTTGCCG ATGCGCTGCA GACGCTGTGC GTGTTCGTGC TGCGCAGCTA CCGCGTCACG
CTGGTGCCTC TGGTGGTCTA TTGCACGCTG CTCTGGGGAG TGGGCCTGGG CGGCAGCTAC
CTGCTGGCCT ACCGCGGGCT GGGGCCCTGG CCCGCCATGC AGTCGCCGCT GGCGTTCTGG
CTCATGAGCG CCGGAGCGCT CGCGCTCACG GCCTTGCTGT TCGGCGCGCT GCTGCGCTGG
ACGATGCGCC GCTCACTTCG CTAG
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| Protein sequence | MSGERGLIAR HAGTVLVGQL AVMAFGVTDT IVAGRYSENA LAALSVGAAV FISVFVSLMG
VLQALLPVWA ELHGADRRSE VGRSVRQSLY LAAIAIAVGM AVLLLPGAVL RWTQVPPAMR
GEVETYLGVL AFALPPALLF RLFSTLNQSL GKPQVVTWLQ LGSLCVKLPL SIWFAFGGAG
LPAMGLVGCA WATLCVNWAM LACAVWLLRS STFYRDYRLW ERIEAPDWRQ IRQFASLGIP
GGLAVLVEVT SFTLMALFIA RLGTAAAAAH QIASNLLAVA YMVPLSLAIA TSARVSFWLG
AGKAAKARRA CRLGFELTAL CALFFAGAMV ALRFRLAHVY SDNPAVIAVA AALLLVVAAY
HFADALQTLC VFVLRSYRVT LVPLVVYCTL LWGVGLGGSY LLAYRGLGPW PAMQSPLAFW
LMSAGALALT ALLFGALLRW TMRRSLR
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