Gene Vapar_2301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2301 
Symbol 
ID7971156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2458758 
End bp2459969 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content65% 
IMG OID644792882 
Productintegrase family protein 
Protein accessionYP_002944195 
Protein GI239815285 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0308484 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGACAG ACACTTTCGT GAGGCAAGTG AAGCACAAGG GCAGTGAGAT CGGCGAGCGC 
TACGCGGATG GTGGCGGCAT GTATCTGCGC GTCAAGGCCG CTGGCAAGTA CTGGCGCATG
GACTACCGGT TCAACGGCAA GGCGAAGACG CTGGCTTTGG GCGTCTACCC CGCGGTCTCG
CTCGCGAAGG CACGGCAGCG GCGCGACAAG GCCCGCGAGC TGCTTGCCGA CAACGTCGAT
CCCGGCCTCG CGAAGCGCGC GGAGAAACTG TCCCGGGCGG TGGAAGCGGC GAACACCTTC
GAGGCGTTGG CGCGGGAATT CCACGCCACC AAGGCCAGCA GTTGGAGTGC GTCCTATTCG
GAGCGCTGGA TGCGCATCAT GGACAAGGAC CTGTTCCCCT ACATCGGCAA GCTGCCGATC
GCCACGATCC AGGCCAAGGA TCTTCTGCAC GCGCTCAAGC GCGCCGAAAG CCGAGGCGTC
ATCGAGACGG CCCACACCTT GCGCCAGTGC GCCGGACAGG TGTTCCGCTA CGGTGTGCAG
ACAGGCCGTT GCGCGAGCAA TCCGGCGCCC GACCTACACG GGGCGCTCCG ACCGGTGATC
ACCAAGAGCA TGGCCGCCGT TCTGGAGCCG CAGAAGGTCG GAGAACTGAT GCGCGCCATC
TACGGCTACA GCGGACAGCC GATCACCCGC GCCGCCCTCC TCCTGTCCGC CCTGCTCTTC
CAGCGCCCCG GCAACATCCG TGCGATGGAA TGGGCCTGGA TCGACCTCGA CAAGGCGATG
CTGACCATCC CGGCGCAGGA CATGAAGCGC AGGCTCCATG AAAAGCGCAA CGGCCGTCCC
CACTTCGTGC CGCTGGCGAA GCAGGCACTG CAGACACTGG AGGAAATTGC GCCATTGACC
GGCCATGGCC GATACGTGTT CCCCAGCATC CGCACGGGAG AGCGCCCCAT GAGCGAAAAC
ACCGTGAACG CGGCGTTGCG AAGGCTGGGA TACACCAACG ACGAGATGAC CGCCCATGGC
TTTCGGGCAA TGGCCCGCAC GGTCATGGCG GAGCAATTGC ACGGCATTTC GCCCGACGTC
ATCGAGGCAC AGCTTGCCCA TGGCAAGAGC GGGCCGCTGG GTGCGGCCTA CGACCGCGCG
GAGTTCATGG ACAAGCGCAA GGACATGATG CAGCGCTGGG CAGACTATCT GTATCAGGTT
GCTATGCGGT AA
 
Protein sequence
MLTDTFVRQV KHKGSEIGER YADGGGMYLR VKAAGKYWRM DYRFNGKAKT LALGVYPAVS 
LAKARQRRDK ARELLADNVD PGLAKRAEKL SRAVEAANTF EALAREFHAT KASSWSASYS
ERWMRIMDKD LFPYIGKLPI ATIQAKDLLH ALKRAESRGV IETAHTLRQC AGQVFRYGVQ
TGRCASNPAP DLHGALRPVI TKSMAAVLEP QKVGELMRAI YGYSGQPITR AALLLSALLF
QRPGNIRAME WAWIDLDKAM LTIPAQDMKR RLHEKRNGRP HFVPLAKQAL QTLEEIAPLT
GHGRYVFPSI RTGERPMSEN TVNAALRRLG YTNDEMTAHG FRAMARTVMA EQLHGISPDV
IEAQLAHGKS GPLGAAYDRA EFMDKRKDMM QRWADYLYQV AMR