| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2271 |
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| Symbol | |
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| ID | 7969985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2414662 |
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| End bp | 2416170 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792853 |
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| Product | flagellar M-ring protein FliF |
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| Protein accession | YP_002944166 |
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| Protein GI | 239815256 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTCT GGCAAGGATT GACGCAGCGC GCGCGCATTG GCCTGGTCGG GGGCGTGCTG
GCCATTGTGC TGGCCATGTC GGCCGCGGCA TGGTGGGTGT TCCACACCGA GTACCAGGTG
CTGTTCGCGG ACCTGAAGCC GCAGGATGCA CAGGCCATGA CCACGGAGCT CGACCGGCTC
AAGATTCCCT ACCGCCTGGG CGACAGCGGC ACCTCCATCC TGGTGGACAA GGCCACCGTG
CATGCGACCC GCATCAAGCT GATGGGCAAG GAGCTTCCGC TGCAGGGCAC GGTCGGTCTC
GAGTTGTTCA ACAACACCGA CTTCGGCATG ACCGAGTTCG CGCAGAAGAT CAACTACCAG
CGCGCGCTGC AAGGCGAACT CACCCGCACG ATCCAGTCGC TGGCGCAAGT GCGCGAGGTG
CGCGTGTTGC TGGCCTTGCC CGAGCAGGGC TTGTTCAAGC AGGCGACATC GAAGGCCAAG
GCATCGATCA CGCTGACCCT GCGCCAGGGG CAGACGCTGC GCGCCGAGCA GGTGACCGGT
GTCCAGCGCC TTGTGGCCGC CGCCGTGCCG GGCATGGCCA CGCAGGACGT GACCATTGTC
GACAGCCATG GCGTGGCGCT CACCCGGGCG GAAGGCAGCA GCGGCGAACT CGAGACGAGC
AGCGCGCGGC TCGATCTGAA GCGCGACACC GAGGCCTACC TGTCGCGCAA GGTCGCGGCC
GTGCTCGATC GCAGCTTTGG CGCCGGGCAG GCGCTGGCCA GCGTGGACGT GATGCTGAAC
ATGGACCAGA TCCGCACGAC CACGGAAGAC GTGCTGCCTG CGGCAACGCG CTCGGGCCTG
CAGTCGACCG GCGTGGTCGT GCGCGAGCGG GAAACGCTGC GCGACGCCGG CGCTGCGCTC
GACGCCAGGG CCAGCGACGT TGGCGGGCCG CGCAGCGGCA GTGCGCAGCG CGATGTCGAA
TACGCGGTAG GCCGGCGCGT GGAGCAGGTG GTCAGCCAGC AGGGGTCGAT CCGGCGCATT
CAGGTGGTTG CCGTCGTGCG CAAGACGCTG GACGCCGCGC AGGAAGACCA GCTGCGCAAG
GTGATTGCCG CCGCGGCCGG TGCGTCGATC GAGCGCGGGG ACACGATCGT CGTGCAATCC
CTGGCCGGCA GCGCCATGCT GGCACCCGAT GCCGCCGCGG GAGCAGCGGC CGCAGCGCAC
GCGGCGCTGA CGTCCGAGGA GTCGGACGAA GCGCCGGTTT CATCGAATTC GCTGGACAAG
GCCAGTCCAA CGCCCGTGCA GTGGCTGCTG GGCGGTGCAT TGATCACAAT GCTGGCCGTG
TGGCTGCTTC GCGCCGGGCG GCGCGGTGTG GCGGTGCGTG AAGCGTCTCA AGGAGCGGCG
TCGCTTTCGG AAGCCGAGCG CGCGGCAGCG CTGCGCCGGG TGCGCGACTG GATGCGCGAG
CCGATGTCCT CCGCACCGGC CGGAAACCCC GCGGCACCCG GCCCGACCGG AGCGAGGAGA
CCCAGTTGA
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| Protein sequence | MNFWQGLTQR ARIGLVGGVL AIVLAMSAAA WWVFHTEYQV LFADLKPQDA QAMTTELDRL
KIPYRLGDSG TSILVDKATV HATRIKLMGK ELPLQGTVGL ELFNNTDFGM TEFAQKINYQ
RALQGELTRT IQSLAQVREV RVLLALPEQG LFKQATSKAK ASITLTLRQG QTLRAEQVTG
VQRLVAAAVP GMATQDVTIV DSHGVALTRA EGSSGELETS SARLDLKRDT EAYLSRKVAA
VLDRSFGAGQ ALASVDVMLN MDQIRTTTED VLPAATRSGL QSTGVVVRER ETLRDAGAAL
DARASDVGGP RSGSAQRDVE YAVGRRVEQV VSQQGSIRRI QVVAVVRKTL DAAQEDQLRK
VIAAAAGASI ERGDTIVVQS LAGSAMLAPD AAAGAAAAAH AALTSEESDE APVSSNSLDK
ASPTPVQWLL GGALITMLAV WLLRAGRRGV AVREASQGAA SLSEAERAAA LRRVRDWMRE
PMSSAPAGNP AAPGPTGARR PS
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