| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2265 |
|---|
| Symbol | |
|---|
| ID | 7969979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2410592 |
|---|
| End bp | 2411647 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644792847 |
|---|
| Product | flagella basal body P-ring formation protein FlgA |
|---|
| Protein accession | YP_002944160 |
|---|
| Protein GI | 239815250 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1261] Flagellar basal body P-ring biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR03170] flagella basal body P-ring formation protein FlgA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.388089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTCG CAAGTAGTTT GCCCCGTTGG ATCGCCTCGG CCCTGGGGGC GGCGGCGATG
TCGGCGACGG CGGTTGCCGG GCCTTCGCCC GACCGGGGCA CCGCGTCTGC GAGCGATCCG
TCGGTCACCA TCGAGTTGCG GCCGTTGGTT CGCGTCGAAC GCGCCAGTGT GCGGCTGGGC
GACATCGCGT TTCTTACCTC GCGCGACCTG TCCACGCTGC GCCGCCTGAT GGCGCTGCCC
ATCGGAACAG CCCCGCGGGC GGGGTCGCCG GTCACGCTCG ACCGCGACAC CATCGTGCGC
TGGGTCGAGG CCCGAAGCGG CCTGCAGTCG GTGGATGGCG CCTTCGGCAT CCGTTGGGGC
GGAGCGGGCG AAACCTCCAT CGAGACCGCA GCGCAGGAAG TGCCTGGCGA AACCGTGGTC
GAGGCCGCGC GCTCGGCGCT TGTCGGCTGG CTGTCGCAGC GCAGCGTGCG CGCCGAAGTG
CAGCCGGTGT CTTCGGCGCG CGACCTGATC CTGCCCGCGG GCGTGCTGGT GCTGCGCGTA
CGGCCGCTTG CAAGCCAGTC GCAGCCATCG AGGCGCATGC TTGTGTGGGT CGACGCCTGG
GTGGATGAGC GTTTTGTGCG CACCACCGCT GTGACCTTCG AAGTCAATGC CTGGGCGCCG
CTTCCGGTTG CCACACAAAG CATGAGAAGC GGCTCCCAGG TCGATGCGGT GTTGCTGCGG
GGCGCCACCG AATCGCGCGA AGTCGACCTC ACGAACATCA GCCACGGCAC GCCCGTGTCT
TCCAGTGCGG AGCTCGACGC GGGCCGGCAG CGCTTGCGCA GGCCGCTGAA GTCCGGCGAG
GTGCTGACCC ATGCGCACCT GGAGCCAGTG CCCGCAGTGG TGCGCGGAAA CTGGGCGCAT
CTTCAGGCCC GCAGCGGTGC CGTATCGGTC GAGAGCCGCG TCGAGGTTCT GCAGGATGGC
CGCACGGGCC AACTCGTTCG CGTCAAGGTT CCGGGGGCGA GCGGCGAGGT GCTCGCGCGG
GTTACCGGGC CCGGCCAGGT CGAGGTGCAG CCATGA
|
|---|
| Protein sequence | MAFASSLPRW IASALGAAAM SATAVAGPSP DRGTASASDP SVTIELRPLV RVERASVRLG
DIAFLTSRDL STLRRLMALP IGTAPRAGSP VTLDRDTIVR WVEARSGLQS VDGAFGIRWG
GAGETSIETA AQEVPGETVV EAARSALVGW LSQRSVRAEV QPVSSARDLI LPAGVLVLRV
RPLASQSQPS RRMLVWVDAW VDERFVRTTA VTFEVNAWAP LPVATQSMRS GSQVDAVLLR
GATESREVDL TNISHGTPVS SSAELDAGRQ RLRRPLKSGE VLTHAHLEPV PAVVRGNWAH
LQARSGAVSV ESRVEVLQDG RTGQLVRVKV PGASGEVLAR VTGPGQVEVQ P
|
|---|
| |