| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2261 |
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| Symbol | |
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| ID | 7969975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2405796 |
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| End bp | 2406893 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792843 |
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| Product | type III secretion exporter |
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| Protein accession | YP_002944156 |
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| Protein GI | 239815246 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR00328] flagellar biosynthetic protein FlhB |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.242916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGAGC AGGACCTCGA CCGCAATGAA GCGGCCACCC CCTACAAGCT GCAGCGTGCG
CGCGAGCGCG GGCAGGCCGC AAAAAGCACC GATGTGGTGG CCGCGCTGGT GTTTGGCGTG
GCGGTGGTCT ACCTGACATG GCGCGGCTTT GGCGCCGTGG CAAGCCAATT CCGTTTCGAC
CAGGCGCTCT TGATACATGC AGGCCGAATG GACCCTTCCG GGGTGGGCCT CTGGCCGCTG
ATCGAGCGCG CGTTGCGCTC CGCGTTGACG CTGGCAGCGC CTTTCTTCGC GGCCATCATG
CTGGCGGCGA TCGTCGGCAA CATGATGCAG ACCGGGCCGA TCCTTTCGTT CGAGCCCGTG
AAGATGGATT TCACCCGGAT CAATCCGGTC AACGGGCTCA AGAAGCTGTT TTCCATGCGC
GTGCTGTTCG ACACGGCACG CGCCATCGTC AAGCTGGCCT TGCTGGGGCT GGTGGCCTTT
CTTGCGCTCG AGGCCCTGGC CAGCCAGTTC TATGCGCTGG CCTCTCTGTC GCCTGTGGGC
TATCTGCGCA CGCTGCTGGA CGACCTCGCA AGCGTCGGGC TGAAGATGGC GCTGGTGCTC
ACGCTGATTG CACTGCTGGA CCTGATGTAC ACGCGACGCG AATTCGCAAA AAAGATGCGG
ATGAGCCAGC GTGAACTCAA GGACGAGGCC AAGCACCGCG AAGGCGACCC CCGCATTCGC
GCCCGGCTGC GCGAACTGCG GCGCGAGACG CTGAAGCGAA GCCTTGCCTT GCGCCAGACG
CGCAATGCGG ACATGCTGAT CACCAACCCC ACGCATCTTG CCGTGGCGCT CAAGTACGAG
CACGGCCGCA TGGCGTCGCC GCAGCTGCTG GCAAAGGGGG CGGGGCACAT GGCGGCCGCC
ATGCGCGAGA TTGCCGCGCG CCATCGCATC CCGGTGGTTC AAAACCCCCC GCTGGCTCGC
CGTCTCTACA AGGAGCTGCC GGTCGATCAC TCGGTGCCCC CCGAGCTCTA TGCGCAGGTG
GCACGCATCA TCGTGTGGGT GTTTGCCATG CGTGAACAGC GGCTGGGCCG CGGTACGTCC
GCGGAAGGCA ACGCATGA
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| Protein sequence | MAEQDLDRNE AATPYKLQRA RERGQAAKST DVVAALVFGV AVVYLTWRGF GAVASQFRFD
QALLIHAGRM DPSGVGLWPL IERALRSALT LAAPFFAAIM LAAIVGNMMQ TGPILSFEPV
KMDFTRINPV NGLKKLFSMR VLFDTARAIV KLALLGLVAF LALEALASQF YALASLSPVG
YLRTLLDDLA SVGLKMALVL TLIALLDLMY TRREFAKKMR MSQRELKDEA KHREGDPRIR
ARLRELRRET LKRSLALRQT RNADMLITNP THLAVALKYE HGRMASPQLL AKGAGHMAAA
MREIAARHRI PVVQNPPLAR RLYKELPVDH SVPPELYAQV ARIIVWVFAM REQRLGRGTS
AEGNA
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