| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2208 |
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| Symbol | |
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| ID | 7969922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2357330 |
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| End bp | 2358076 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792796 |
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| Product | RNA methyltransferase, TrmH family, group 3 |
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| Protein accession | YP_002944109 |
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| Protein GI | 239815199 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0566] rRNA methylases |
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| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.531626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCTC CCAAAGTGAT CTTCGGCTTC CATGCCGTGG GCGTGCGCAT CAAGACCGCG
CCCAAATCGG TGCTCGAAGT GATGTTCGAC ACCAGCCGGC GCGATGCGCG CATGAAACAG
TTCATCGCCC GCGCGCAGGA GGCCGGCGTG CGGCTGGTCG AGGCCGACGG GCTGCGGCTG
GCCAAGCTCA GCGGCAGCCA TGGTCACCAG GGCGTGGTCG CGCGGGTCGA GCCCATTGCG
CAGGTGCGTT CGCTCGACGA ACTGCTCGAA GGCCTGGAGG AGGCCGGCAC CGTGCCGCTC
CTGCTGGTGC TCGACGGCGT GACCGATCCG CACAACCTGG GCGCCTGCCT GCGCGTGGCC
GACGGTGCCG GGGCCCATGC GGTGATCGCG CCCAAGGACC ATGCGGCCGG CATCAACGCC
ACCGTGGCCA AGGTGGCGAG CGGCGCGGCC GAGACGGTGC CCTATTTCAT GGTGACCAAC
CTCGCGCGCA CGCTGAACGA ACTCAAGGAA CGCAGCATCT GGTGCGTCGG CACCAGCGAC
GATGCGCCCG GCACCCTCTA CCAGAGCGAC CTCAAGCGGC CGCTGGCGCT GGTGCTCGGC
GCCGAAGGCG AGGGCATGCG CCAGCTCACC CGCAAGACCT GCGACGAGCT CGTGAGCATT
CCCATGGCGG GCGCGGTCGA GAGCCTGAAC GTTTCCGTAG CCAGCGGCGT GTGCCTCTAC
GAGGCCATGC GGCAGCGCAG CGCCTGA
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| Protein sequence | MSSPKVIFGF HAVGVRIKTA PKSVLEVMFD TSRRDARMKQ FIARAQEAGV RLVEADGLRL
AKLSGSHGHQ GVVARVEPIA QVRSLDELLE GLEEAGTVPL LLVLDGVTDP HNLGACLRVA
DGAGAHAVIA PKDHAAGINA TVAKVASGAA ETVPYFMVTN LARTLNELKE RSIWCVGTSD
DAPGTLYQSD LKRPLALVLG AEGEGMRQLT RKTCDELVSI PMAGAVESLN VSVASGVCLY
EAMRQRSA
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